Transition State Searching Accelerated by Neural Network Potential.

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2025-02-20 DOI:10.1021/acs.jcim.4c01714
Bowen Li, Jin Xiao, Ya Gao, John Z H Zhang, Tong Zhu
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引用次数: 0

Abstract

Understanding transition states is pivotal in the design of efficient chemical processes and catalysts. However, identifying transition states is challenging due to the resource-intensive and iterative nature of current computational methods. This study integrates neural network potentials with physical models to enhance the transition state prediction. Different neural network potentials and transition states locating algorithms are benchmarked. By combining NequIP with the energy-weighted Climbing Image-Nudged Elastic Band (EW-CI-NEB) method, we achieved highly accurate transition state predictions, significantly surpassing semiempirical methods in accuracy and greatly outpacing density functional theory in efficiency. Additionally, the transferability of the model was evaluated using a NequIP model trained on a refined subset of the dataset, and the model's performance was further improved through active learning. This method can directly search for transition states in given reactions or serve as an efficient tool for generating initial guesses of transition state structures, significantly reducing manual effort.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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