Identifying Endogenous Proteins of Perennial Ryegrass (Lolium perenne) with Ex Vivo Antioxidant Activity.

IF 3.6 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Proteomes Pub Date : 2025-02-05 DOI:10.3390/proteomes13010008
Kathrine Danner Aakjær Pedersen, Line Thopholm Andersen, Mads Heiselberg, Camilla Agerskov Brigsted, Freja Lyngs Støvring, Louise Mailund Mikkelsen, Sofie Albrekt Hansen, Christian Enrico Rusbjerg-Weberskov, Mette Lübeck, Simon Gregersen Echers
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Abstract

Background: During the initial steps of green biorefining aimed at protein recovery, endogenous proteins and enzymes, along with, e.g., phytochemical constituents, are decompartmentalized into a green juice. This creates a highly dynamic environment prone to a plethora of reactions including oxidative protein modification and deterioration. Obtaining a fundamental understanding of the enzymes capable of exerting antioxidant activity ex vivo could help mitigate these reactions for improved product quality. Methods: In this study, we investigated perennial ryegrass (Lolium perenne var. Abosan 1), one of the most widely used turf and forage grasses, as a model system. Using size exclusion chromatography, we fractionated the green juice to investigate in vitro antioxidant properties and coupled this with quantitative bottom-up proteomics, GO-term analysis, and fraction-based enrichment. Results: Our findings revealed that several enzymes, such as superoxide dismutase and peroxiredoxin proteoforms, already known for their involvement in in vivo oxidative protection, are enriched in fractions displaying increased in vitro antioxidant activity, indicating retained activity ex vivo. Moreover, this study provides the most detailed characterization of the L. perenne proteome today and delivers new insights into protein-level partitioning during wet fractionation. Conclusions: Ultimately, this work contributes to a better understanding of the first steps of green biorefining and provides the basis for process optimization.

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多年生黑麦草(Lolium perenne)体内抗氧化活性内源蛋白的鉴定
背景:在以蛋白质回收为目的的绿色生物精炼的初始步骤中,内源性蛋白质和酶以及植物化学成分等被分解成绿色果汁。这就形成了一个高度动态的环境,容易发生大量反应,包括蛋白质氧化修饰和变质。从根本上了解能够在体内发挥抗氧化活性的酶,有助于减轻这些反应,从而提高产品质量。方法:在这项研究中,我们以多年生黑麦草(Lolium perenne var. Abosan 1)为模型系统进行了调查,它是最广泛使用的草皮和牧草之一。利用尺寸排阻色谱法,我们对绿汁进行了分馏,以研究体外抗氧化特性,并将其与自下而上的定量蛋白质组学、GO-项分析和基于分馏的富集相结合。结果:我们的研究结果表明,一些酶(如超氧化物歧化酶和过氧化物酶蛋白形式)因参与体内氧化保护而闻名,它们在体外抗氧化活性增强的馏分中富集,表明其体内活性得以保留。此外,这项研究还提供了目前最详细的珍珠果蛋白质组特征,并对湿法分馏过程中蛋白质水平的分配提供了新的见解。结论:最终,这项工作有助于更好地理解绿色生物炼制的第一步,并为工艺优化奠定基础。
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来源期刊
Proteomes
Proteomes Biochemistry, Genetics and Molecular Biology-Clinical Biochemistry
CiteScore
6.50
自引率
3.00%
发文量
37
审稿时长
11 weeks
期刊介绍: Proteomes (ISSN 2227-7382) is an open access, peer reviewed journal on all aspects of proteome science. Proteomes covers the multi-disciplinary topics of structural and functional biology, protein chemistry, cell biology, methodology used for protein analysis, including mass spectrometry, protein arrays, bioinformatics, HTS assays, etc. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on the length of papers. Scope: -whole proteome analysis of any organism -disease/pharmaceutical studies -comparative proteomics -protein-ligand/protein interactions -structure/functional proteomics -gene expression -methodology -bioinformatics -applications of proteomics
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