Semi-rational engineering of a novel halohydrin dehalogenase from Sneathiella limimaris for the enantioselective synthesis of (S)-5-phenoxymethyl-2-oxazolidinone

IF 4.7 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Bioorganic Chemistry Pub Date : 2025-04-01 Epub Date: 2025-02-19 DOI:10.1016/j.bioorg.2025.108292
Ji Ding , Jinsong Song , Shengbo Huang , Chuanhua Zhou , Feng Xue
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Abstract

Enantiomerically pure 2-oxazolidinones are widely used as chiral auxiliaries in organic synthesis, but there is an unmet need for more effective methods to access these compounds. Here we report the identification and semi-rational engineering of the halohydrin dehalogenase SlHHDH from Sneathiella limimaris for the highly enantioselective ring-opening of phenyl glycidyl ether (PGE) with cyanate to yield (S)-5-phenoxymethyl-2-oxazolidinone. After single and combinatorial mutagenesis, the best enantioselective triple mutant, F15W/A137T/N179L achieved an enantioselectivity of 97 %, with an E value of 154. In addition, it could accept a wider range of PGEs to generate corresponding (S)-5-phenoxymethyl-2-oxazolidinones, whereby the product ee values increased from less than 5 % in wild-type SlHHDH to between 81 and 96 % in the triple mutant. Structural analysis of SlHHDH and mutant F15W/A137T/N179L in complex with the substrate PGE showed that changes of the substrate-binding pocket in the mutant position R-PGE farther from the catalytic residues, which may explain the enhanced enantioselectivity. This mutant has great potential as a biocatalyst for the first synthesis of chiral (S)-5-phenoxymethyl-2-oxazolidinones.

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半合理工程技术制备一种新型盐酰脱卤酶,用于(S)-5-苯氧甲基-2-恶唑烷酮的对体选择性合成
对映体纯2-恶唑烷酮作为手性助剂广泛应用于有机合成中,但目前还不需要更有效的方法来获取这些化合物。本文报道了一种来自Sneathiella limimaris的卤代醇脱卤酶SlHHDH的鉴定和半合理工程设计,该酶用于苯基缩水甘油醚(PGE)与氰酸酯的高对端选择性开环反应,得到(S)-5-苯氧甲基-2-恶唑烷酮。经单次和组合诱变后,最佳的三突变体F15W/A137T/N179L对映选择性达到97%,E值为154。此外,它可以接受更广泛的PGEs来生成相应的(S)-5-苯氧甲基-2-恶唑烷酮,其产物ee值从野生型SlHHDH的不到5%增加到三突变体的81 - 96%。SlHHDH和突变体F15W/A137T/N179L与底物PGE配合物的结构分析表明,突变体R-PGE离催化残基更远的位置的底物结合囊发生了变化,这可能是对映体选择性增强的原因。该突变体具有作为生物催化剂首次合成手性(S)-5-苯氧甲基-2-恶唑烷酮的潜力。
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阿拉丁
(R)-PGE
阿拉丁
(S)-PGE
阿拉丁
PGE (1a)
来源期刊
Bioorganic Chemistry
Bioorganic Chemistry 生物-生化与分子生物学
CiteScore
9.70
自引率
3.90%
发文量
679
审稿时长
31 days
期刊介绍: Bioorganic Chemistry publishes research that addresses biological questions at the molecular level, using organic chemistry and principles of physical organic chemistry. The scope of the journal covers a range of topics at the organic chemistry-biology interface, including: enzyme catalysis, biotransformation and enzyme inhibition; nucleic acids chemistry; medicinal chemistry; natural product chemistry, natural product synthesis and natural product biosynthesis; antimicrobial agents; lipid and peptide chemistry; biophysical chemistry; biological probes; bio-orthogonal chemistry and biomimetic chemistry. For manuscripts dealing with synthetic bioactive compounds, the Journal requires that the molecular target of the compounds described must be known, and must be demonstrated experimentally in the manuscript. For studies involving natural products, if the molecular target is unknown, some data beyond simple cell-based toxicity studies to provide insight into the mechanism of action is required. Studies supported by molecular docking are welcome, but must be supported by experimental data. The Journal does not consider manuscripts that are purely theoretical or computational in nature. The Journal publishes regular articles, short communications and reviews. Reviews are normally invited by Editors or Editorial Board members. Authors of unsolicited reviews should first contact an Editor or Editorial Board member to determine whether the proposed article is within the scope of the Journal.
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