Diagnosis of diabetes and hypertension: A performance comparison between transcriptome data and clinical data

IF 1 Q4 GENETICS & HEREDITY Gene Reports Pub Date : 2025-02-22 DOI:10.1016/j.genrep.2025.102176
Pratheeba Jeyananthan, T.A.P. Dharmasena, W.D.A. Nuwansiri
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Abstract

Diabetes and hypertension are two related diseases common among most of the people all over the word. The impact of these diseases can elevate the risk of developing additional health issues, including cardiovascular disease, kidney disease, and other related conditions. Numerous research initiatives are underway to uncover the underlying mechanisms of these diseases. This study compares the roles of clinical data and transcriptome data in the diagnosis of patients with diabetes or hypertension. This study utilizes two distinct datasets, each containing unique clinical features along with a third dataset that includes transcriptome characteristics, all analyzed through machine learning algorithms. In both diseases, there is a marked difference in the accuracies of the models based on various clinical features. This highlights the importance of selecting appropriate clinical features to develop an optimal diagnostic model for these conditions. In comparing the best clinical model with the transcriptome model for diagnosing diabetic patients, it has been found that the transcriptome data yields superior results. Conversely, for diagnosing hypertension patients, the clinical data proves to be more effective. Hence, identifying the appropriate set of clinical features, clinical data could become more effective for diagnosing both diabetes and hypertension.
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来源期刊
Gene Reports
Gene Reports Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.30
自引率
7.70%
发文量
246
审稿时长
49 days
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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