Infrared spectrum analysis of organic molecules with neural networks using standard reference data sets in combination with real-world data

IF 5.7 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Journal of Cheminformatics Pub Date : 2025-02-26 DOI:10.1186/s13321-025-00960-2
Dev Punjabi, Yu-Chieh Huang, Laura Holzhauer, Pierre Tremouilhac, Pascal Friederich, Nicole Jung, Stefan Bräse
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Abstract

In this study, we propose a neural network- based approach to analyze IR spectra and detect the presence of functional groups. Our neural network architecture is based on the concept of learning split representations. We demonstrate that our method achieves favorable validation performance using the NIST dataset. Furthermore, by incorporating additional data from the open-access research data repository Chemotion, we show that our model improves the classification performance for nitriles and amides.

Scientific contribution: Our method exclusively uses IR data as input for a neural network, making its performance, unlike other well-performing models, independent of additional data types obtained from analytical measurements. Furthermore, our proposed method leverages a deep learning model that outperforms previous approaches, achieving F1 scores above 0.7 to identify 17 functional groups. By incorporating real-world data from various laboratories, we demonstrate how open-access, specialized research data repositories can serve as yet unexplored, valuable benchmark datasets for future machine learning research.

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利用神经网络,结合真实世界数据,使用标准参考数据集分析有机分子的红外光谱
在这项研究中,我们提出了一种基于神经网络的方法来分析红外光谱并检测官能团的存在。我们的神经网络架构是基于学习分裂表征的概念。我们使用NIST数据集证明了我们的方法获得了良好的验证性能。此外,通过整合来自开放存取研究数据库Chemotion的额外数据,我们表明我们的模型提高了腈和酰胺的分类性能。科学贡献:我们的方法专门使用红外数据作为神经网络的输入,使其性能与其他性能良好的模型不同,独立于从分析测量中获得的其他数据类型。此外,我们提出的方法利用了一个深度学习模型,该模型优于以前的方法,在识别17个官能团时获得了0.7以上的F1分数。通过整合来自不同实验室的真实世界数据,我们展示了开放访问的专业研究数据存储库如何为未来的机器学习研究提供尚未开发的有价值的基准数据集。
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来源期刊
Journal of Cheminformatics
Journal of Cheminformatics CHEMISTRY, MULTIDISCIPLINARY-COMPUTER SCIENCE, INFORMATION SYSTEMS
CiteScore
14.10
自引率
7.00%
发文量
82
审稿时长
3 months
期刊介绍: Journal of Cheminformatics is an open access journal publishing original peer-reviewed research in all aspects of cheminformatics and molecular modelling. Coverage includes, but is not limited to: chemical information systems, software and databases, and molecular modelling, chemical structure representations and their use in structure, substructure, and similarity searching of chemical substance and chemical reaction databases, computer and molecular graphics, computer-aided molecular design, expert systems, QSAR, and data mining techniques.
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