Acidity Prediction in Arbitrary Solvents: Machine Learning Based on Semiempirical Molecular Orbital Calculation.

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry A Pub Date : 2025-03-13 Epub Date: 2025-02-26 DOI:10.1021/acs.jpca.4c07367
Rima Suzuki, Hirotoshi Mori
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Abstract

Due to the nonlinearity of solvent effects, careful solvent selection is essential when using acids in different applications. However, there is a lack of measurements of pKa while systematically changing molecular structures and solvents. Consequently, there was no protocol to predict the acidity in arbitrary environments. This study developed an arbitrary environment pKa prediction protocol by integrating quantum chemical calculations using a polarizable continuum model and machine learning. This protocol constructed models to predict the acidity of biologically relevant molecules in water and candidate superstrong acids in organic solvents. For both systems, the pKa can be predicted with an average absolute error of 1.1 by learning relatively small number of data. This approach can also account for the nonlinear decay of acidity with solvation in different environments (compression effect). The versatility of the protocol extends to its applicability to a wide range of compounds, including those with complex electronic state changes upon proton dissociation, supporting research in diverse fields including, but not limited to, drug discovery and engineering.

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任意溶剂中的酸度预测:基于半经验分子轨道计算的机器学习。
由于溶剂效应的非线性,在不同的应用中使用酸时,仔细的溶剂选择是必不可少的。然而,在系统地改变分子结构和溶剂的同时,缺乏对pKa的测量。因此,没有方案来预测任意环境下的酸度。本研究利用极化连续统模型和机器学习结合量子化学计算,开发了一种任意环境pKa预测方案。该方案构建模型来预测水中生物相关分子和有机溶剂中候选强酸的酸度。对于这两个系统,通过学习相对较少的数据,可以以1.1的平均绝对误差预测pKa。该方法还可以解释不同环境下随溶剂化作用的酸度非线性衰减(压缩效应)。该协议的多功能性扩展到其适用于广泛的化合物,包括那些在质子解离时具有复杂电子状态变化的化合物,支持不同领域的研究,包括但不限于药物发现和工程。
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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
期刊最新文献
Bonding Nature of Diabatic Representation in Nonlinear Hydrogen Atom Transfer Reactions. Covalency of the Strong Br···N Halogen Bonds in Neutral and Ionic Complexes. Issue Editorial Masthead Issue Publication Information A Review of 2025 at The Journal of Physical Chemistry A
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