Discovery of a potent and in vivo anti-inflammatory Efficacious, P2Y14R antagonist with a novel benzisoxazoles scaffold by DNA-encoded chemical library technology

IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL European Journal of Medicinal Chemistry Pub Date : 2025-05-05 Epub Date: 2025-02-27 DOI:10.1016/j.ejmech.2025.117451
Zhiyi Wei , Bingqian Han , Longhua Yang , Jiannan Zhao , Takashi Nakai , Suyi Chen , Yongfang Yao , Chuanjun Song , Yongtao Duan
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Abstract

P2Y14R is activated by UDP (uridine diphosphate) and UDP glucose and associated with the development of many inflammatory diseases. P2Y14R antagonists are expected to be a new choice for the treatment of inflammatory diseases. A DNA-encoded chemical library (DEL) of 4 billion molecules was screened, leading to the identification of compound A, a novel benzisoxazole scaffold-based P2Y14 antagonist with an IC50 value of 23.60 nM. Binding mode analysis and SPR analysis (KD = 7.26 μM) demonstrated that Compound A bind strongly to P2Y14R. ‌Molecular dynamics simulations and binding free energy calculations were performed to analyze the binding mode of Compound A with P2Y14R. And in the LPS-induced acute lung injury mice, after treatment with Compound A, the degree of lung injury was greatly reduced, the infiltration of immune cells was decreased, the level of inflammatory factors IL-6, TNF-α and IL-β were considerably decreased. Compound A exhibited good P2Y14R antagonist activity, demonstrated efficacy both in vitro and in vivo, possessed favorable druggability, and featured a novel benzisoxazole scaffold with potential for further optimization, providing a new strategy for developing subsequent P2Y14 antagonists.

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基于dna编码化学文库技术的新型苯并恶唑支架有效抗炎P2Y14R拮抗剂的发现
P2Y14R被UDP(尿苷二磷酸)和UDP葡萄糖激活,并与许多炎症性疾病的发展相关。P2Y14R拮抗剂有望成为治疗炎性疾病的新选择。通过筛选40亿分子的dna编码化学文库(DEL),鉴定出新型苯并恶唑支架类P2Y14拮抗剂化合物A, IC50值为23.60 nM。结合模式分析和SPR分析(KD = 7.26 μM)表明化合物A与P2Y14R结合较强。通过分子动力学模拟和结合自由能计算来分析化合物A与P2Y14R的结合模式。在lps诱导的急性肺损伤小鼠中,化合物A治疗后肺损伤程度大大减轻,免疫细胞浸润减少,炎症因子IL-6、TNF-α、IL-β水平明显降低。化合物A具有良好的P2Y14R拮抗剂活性,体外和体内均有效,具有良好的可药物性,并且具有新的苯并恶唑支架,具有进一步优化的潜力,为后续P2Y14拮抗剂的开发提供了新的策略。
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来源期刊
CiteScore
11.70
自引率
9.00%
发文量
863
审稿时长
29 days
期刊介绍: The European Journal of Medicinal Chemistry is a global journal that publishes studies on all aspects of medicinal chemistry. It provides a medium for publication of original papers and also welcomes critical review papers. A typical paper would report on the organic synthesis, characterization and pharmacological evaluation of compounds. Other topics of interest are drug design, QSAR, molecular modeling, drug-receptor interactions, molecular aspects of drug metabolism, prodrug synthesis and drug targeting. The journal expects manuscripts to present the rational for a study, provide insight into the design of compounds or understanding of mechanism, or clarify the targets.
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