AutoDPS: An unsupervised diffusion model based method for multiple degradation removal in MRI

IF 4.8 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2025-02-27 DOI:10.1016/j.cmpb.2025.108684
Arunima Sarkar , Ayantika Das , Keerthi Ram , Sriprabha Ramanarayanan , Suresh Emmanuel Joel , Mohanasankar Sivaprakasam
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Abstract

Background and Objective:

Diffusion models have demonstrated their ability in image generation and solving inverse problems like restoration. Unlike most existing deep-learning based image restoration techniques which rely on unpaired or paired data for degradation awareness, diffusion models offer an unsupervised degradation independent alternative. This is well-suited in the context of restoring artifact-corrupted Magnetic Resonance Images (MRI), where it is impractical to exactly model the degradations apriori. In MRI, multiple corruptions arise, for instance, from patient movement compounded by undersampling artifacts from the acquisition settings.

Methods:

To tackle this scenario, we propose AutoDPS, an unsupervised method for corruption removal in brain MRI based on Diffusion Posterior Sampling. Our method (i) performs motion-related corruption parameter estimation using a blind iterative solver, and (ii) utilizes the knowledge of the undersampling pattern when the corruption consists of both motion and undersampling artifacts. We incorporate this corruption operation during sampling to guide the generation in recovering high-quality images.

Results:

Despite being trained to denoise and tested on completely unseen corruptions, our method AutoDPS has shown 1.63 dB of improvement in PSNR over baselines for realistic 3D motion restoration and 0.5 dB of improvement for random motion with undersampling. Additionally, our experiments demonstrate AutoDPS’s resilience to noise and its generalization capability under domain shift, showcasing its robustness and adaptability.

Conclusion:

In this paper, we propose an unsupervised method that removes multiple corruptions, mainly motion with undersampling, in MRI images which are essential for accurate diagnosis. The experiments show promising results on realistic and composite artifacts with higher improvement margins as compared to other methods. Our code is available at https://github.com/arunima101/AutoDPS/tree/master

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AutoDPS:基于无监督扩散模型的磁共振成像多重降解去除方法
背景与目的:扩散模型在图像生成和解决反演问题(如恢复)方面已经证明了其能力。与大多数现有的基于深度学习的图像恢复技术不同,这些技术依赖于未配对或成对的数据来进行退化感知,扩散模型提供了一种无监督的退化独立替代方案。这非常适合于恢复人工损坏的磁共振图像(MRI),在这种情况下,对先验的退化进行精确建模是不切实际的。在MRI中,多重损坏会出现,例如,由于患者的运动加上采集设置的采样不足。方法:为了解决这一问题,我们提出了一种基于扩散后验采样的无监督脑MRI腐败去除方法AutoDPS。我们的方法(i)使用盲迭代求解器执行与运动相关的损坏参数估计,并且(ii)当损坏由运动和欠采样工件组成时,利用欠采样模式的知识。我们在采样过程中加入了这种损坏操作,以指导生成恢复高质量的图像。结果:尽管经过去噪训练并在完全看不见的损坏上进行了测试,但我们的方法AutoDPS在真实3D运动恢复方面的PSNR比基线提高了~ 1.63 dB,在缺乏采样的随机运动方面提高了~ 0.5 dB。此外,我们的实验证明了AutoDPS对噪声的恢复能力和在域移位下的泛化能力,显示了它的鲁棒性和适应性。结论:在本文中,我们提出了一种无监督的方法,可以去除MRI图像中的多种损坏,主要是运动和欠采样,这对准确诊断至关重要。实验结果表明,与其他方法相比,该方法在真实和复合工件上具有较高的改进余地。我们的代码可在https://github.com/arunima101/AutoDPS/tree/master上获得
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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