{"title":"Whole genome characterization of feline coronaviruses in Thailand: evidence of genetic recombination and mutation M1058L in pathotype switch.","authors":"Eaint Min Phyu, Kamonpan Charoenkul, Chanakarn Nasamran, Ekkapat Chamsai, Yu Nandi Thaw, Hnin Wai Phyu, Han Win Soe, Supassama Chaiyawong, Alongkorn Amonsin","doi":"10.3389/fvets.2025.1451967","DOIUrl":null,"url":null,"abstract":"<p><p>Feline coronavirus (FCoV) is a significant pathogen that infects the feline population worldwide. FCoV can cause mild enteric disease and a fatal systemic disease called feline infectious peritonitis (FIP). In this study, a cross-sectional survey of FCoV in domestic cats from small animal hospitals in Thailand was conducted from January to December 2021. Our result showed that out of 238 samples tested for FCoV using 3' UTR-specific RT-PCR, 18.7% (28/150) of asymptomatic cats and 25.5% (12/47) of cats with unknown status tested positive for FCoVs. Additionally, 51.2% (21/41) of cats with suspected FIP were found to be positive for FCoVs. Genotype identification using S gene-specific RT-PCR showed that all FCoV-positive samples (n = 61) were FCoV type I. This study obtained the whole genome sequences (<i>n</i> = 3) and S gene sequences (<i>n</i> = 21) of Thai-FCoVs. Notably, this study is the first to report the whole genome of Thai-FCoV. Phylogenetic analysis indicated that Thai-FCoVs were closely related to FCoVs from China and Europe. Additionally, the Thai-FCoVs exhibited specific amino acid substitutions (M1058L) associated with the pathotype switch. Recombination events were found to mainly occur in the ORF1ab and S gene regions of Thai-FCoVs. This study provides insights into the occurrence, genetic diversity, virulence amino acid mutations, and potential recombination of FCoVs in the domestic cat population in Thailand, contributing to our understanding of FCoV epidemiology.</p>","PeriodicalId":12772,"journal":{"name":"Frontiers in Veterinary Science","volume":"12 ","pages":"1451967"},"PeriodicalIF":2.9000,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11869453/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Veterinary Science","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3389/fvets.2025.1451967","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"VETERINARY SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Feline coronavirus (FCoV) is a significant pathogen that infects the feline population worldwide. FCoV can cause mild enteric disease and a fatal systemic disease called feline infectious peritonitis (FIP). In this study, a cross-sectional survey of FCoV in domestic cats from small animal hospitals in Thailand was conducted from January to December 2021. Our result showed that out of 238 samples tested for FCoV using 3' UTR-specific RT-PCR, 18.7% (28/150) of asymptomatic cats and 25.5% (12/47) of cats with unknown status tested positive for FCoVs. Additionally, 51.2% (21/41) of cats with suspected FIP were found to be positive for FCoVs. Genotype identification using S gene-specific RT-PCR showed that all FCoV-positive samples (n = 61) were FCoV type I. This study obtained the whole genome sequences (n = 3) and S gene sequences (n = 21) of Thai-FCoVs. Notably, this study is the first to report the whole genome of Thai-FCoV. Phylogenetic analysis indicated that Thai-FCoVs were closely related to FCoVs from China and Europe. Additionally, the Thai-FCoVs exhibited specific amino acid substitutions (M1058L) associated with the pathotype switch. Recombination events were found to mainly occur in the ORF1ab and S gene regions of Thai-FCoVs. This study provides insights into the occurrence, genetic diversity, virulence amino acid mutations, and potential recombination of FCoVs in the domestic cat population in Thailand, contributing to our understanding of FCoV epidemiology.
期刊介绍：
Frontiers in Veterinary Science is a global, peer-reviewed, Open Access journal that bridges animal and human health, brings a comparative approach to medical and surgical challenges, and advances innovative biotechnology and therapy.
Veterinary research today is interdisciplinary, collaborative, and socially relevant, transforming how we understand and investigate animal health and disease. Fundamental research in emerging infectious diseases, predictive genomics, stem cell therapy, and translational modelling is grounded within the integrative social context of public and environmental health, wildlife conservation, novel biomarkers, societal well-being, and cutting-edge clinical practice and specialization. Frontiers in Veterinary Science brings a 21st-century approach—networked, collaborative, and Open Access—to communicate this progress and innovation to both the specialist and to the wider audience of readers in the field.
Frontiers in Veterinary Science publishes articles on outstanding discoveries across a wide spectrum of translational, foundational, and clinical research. The journal''s mission is to bring all relevant veterinary sciences together on a single platform with the goal of improving animal and human health.
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