Local Diffusion Coefficients in Spherically Symmetric Systems Using the Smoluchowski Equation and Molecular Dynamics.

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2025-03-20 Epub Date: 2025-03-05 DOI:10.1021/acs.jpcb.4c07900
Cyril Jose Palathinkal, Jennifer R Lukes
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Abstract

Interfacial systems with spherical symmetry are ubiquitous in nature and the accurate estimation of local self-diffusion coefficients in these systems is crucial to our understanding of processes such as the partitioning of atmospheric species to aerosol droplets and water transport across cell membranes. In this work, we extend a method originally developed to estimate local diffusion coefficients in systems with flat interfaces to the spherically symmetric case. Specifically, we derive an analytical solution to the linearized Smoluchowski equation in spherical coordinates and utilize molecular dynamics simulations to obtain a parameter required to estimate the local self-diffusion coefficient from the solution. We demonstrate that the derived solution is indeed accurate by comparing it to the numerical solution and also validate that the assumptions under which our solution was derived are not too stringent. We further validate our solution by computing the local diffusion coefficients at different radial positions in bulk SPC/E water and comparing the results to the overall diffusion coefficient obtained from Einstein's mean squared displacement method. Finally, we apply the method to an SPC/E water droplet suspended in its own vapor. We observe that the diffusion coefficient increases from the center of the droplet toward the interface, a result in line with previous results reported for flat interfaces.

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用Smoluchowski方程和分子动力学研究球对称系统的局部扩散系数。
具有球对称的界面系统在自然界中无处不在,准确估计这些系统中的局部自扩散系数对于我们理解大气物质向气溶胶滴的分配和水跨细胞膜运输等过程至关重要。在这项工作中,我们将最初开发的用于估计平面界面系统局部扩散系数的方法扩展到球对称情况。具体来说,我们在球坐标下推导了线性化的Smoluchowski方程的解析解,并利用分子动力学模拟得到了从解中估计局部自扩散系数所需的参数。通过与数值解的比较,我们证明了导出的解确实是准确的,并且验证了导出解的假设不是太严格。通过计算大量SPC/E水在不同径向位置的局部扩散系数,并将结果与爱因斯坦均方位移法得到的总体扩散系数进行比较,进一步验证了我们的解决方案。最后,我们将该方法应用于悬浮在自身蒸汽中的SPC/E水滴。我们观察到扩散系数从液滴中心向界面方向增加,这与之前报道的平面界面的结果一致。
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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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