(Limited) Predictability of thermal adaptation in invertebrates.

IF 2.6 2区 生物学 Q2 BIOLOGY Journal of Experimental Biology Pub Date : 2025-03-01 Epub Date: 2025-03-07 DOI:10.1242/jeb.249450
James A deMayo, Gregory J Ragland
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Abstract

Evolutionary genomic approaches provide powerful tools to understand variation in and evolution of physiological processes. Untargeted genomic or transcriptomic screens can identify functionally annotated candidate genes linked to specific physiological processes, in turn suggesting evolutionary roles for these processes. Such studies often aim to inform modeling of the potential of natural populations to adapt to climate change, but these models are most accurate when evolutionary responses are repeatable, and thus predictable. Here, we synthesize the evolutionary genetic and comparative transcriptomic literature on terrestrial and marine invertebrates to assess whether evolutionary responses to temperature are repeatable within populations, across populations and across species. There is compelling evidence for repeatability, sometimes even across species. However, responses to laboratory selection and geographic variation across thermal gradients appear to be highly idiosyncratic. We also survey whether genetic/transcriptomic studies repeatedly identify candidate genes in three functional groups previously associated with the response to thermal stress: heat shock protein (Hsp) genes, proteolysis genes and immunity genes. Multiple studies across terrestrial and marine species identify candidates included in these gene sets. Yet, each of the gene sets are identified in only a minority of studies. Together, these patterns suggest that there is limited predictability of evolutionary responses to natural selection, including across studies within species. We discuss specific patterns for the candidate gene sets, implications for predictive modeling, and other potential applications of evolutionary genetics in elucidating physiology and gene function. Finally, we discuss limitations of inferences from available evolutionary genetic studies and directions for future research.

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(有限)无脊椎动物热适应的可预测性。
进化基因组方法为理解生理过程的变异和进化提供了有力的工具。非靶向基因组或转录组筛选可以识别与特定生理过程相关的功能注释候选基因,进而提示这些过程的进化作用。这类研究通常旨在为自然种群适应气候变化的潜力建模提供信息,但当进化反应可重复时,这些模型最准确,因此是可预测的。在这里,我们综合了陆地和海洋无脊椎动物的进化遗传和比较转录组学文献,以评估对温度的进化反应是否在种群内、种群间和物种间可重复。有令人信服的证据表明可重复性,有时甚至跨物种。然而,对实验室选择和跨热梯度的地理差异的响应似乎是高度特殊的。我们还调查了遗传/转录组学研究是否重复鉴定了先前与热应激反应相关的三个功能组中的候选基因:热休克蛋白(Hsp)基因、蛋白水解基因和免疫基因。对陆地和海洋物种的多项研究确定了这些基因集中的候选物种。然而,每一组基因只在少数研究中被识别出来。总之,这些模式表明,对自然选择的进化反应的可预测性有限,包括跨物种的研究。我们讨论了候选基因集的特定模式,预测建模的含义,以及进化遗传学在阐明生理和基因功能方面的其他潜在应用。最后,我们讨论了现有进化遗传学研究的局限性和未来研究的方向。
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来源期刊
CiteScore
5.50
自引率
10.70%
发文量
494
审稿时长
1 months
期刊介绍: Journal of Experimental Biology is the leading primary research journal in comparative physiology and publishes papers on the form and function of living organisms at all levels of biological organisation, from the molecular and subcellular to the integrated whole animal.
期刊最新文献
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