Assessment of dynamic removal mechanism of non-steroidal anti-inflammatory biomolecules in the aqueous environments by a novel covalent organic framework

IF 3 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2025-03-04 DOI:10.1016/j.jmgm.2025.109006
Saeed Pourmand , Sara Zareei , Mohammad Pourmand , Sima Majidi , Hamid Erfan-Niya
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Abstract

Covalent Organic Frameworks (COFs) are a new class of highly porous crystalline substances which have demonstrated excellent potential as novel adsorbents for efficient depollution of pharmaceutical compounds from wastewater. Herein, the molecular mechanism involved in the removal process of non-steroidal anti-inflammatory drug residues, Ibuprofen (IBP) and Naproxen (NPX), from polluted water by an emerging novel COF functionalized with vinyl groups (COF-V), is evaluated through molecular dynamics (MD) simulations under various external electric fields (EFs). MD analyses show that COF-V is efficient in drug loading capacity of % 100 with total interaction energy value of −519.66 and −415.21 kJ/mol for NPX and IBP in single-component systems. In addition, both drug molecules can be simultaneously and efficiently removed in NPX/IBP/COF-V binary system. The van der Waals (vdW) potential is the primary force during the removal mechanism of drug residues. The efficacy of removing biomolecules from wastewater using COF-V substrate is reduced as the strength of EF is intensified in such a way an enhancement of solvent-accessible surface area (SASA) value of the adsorbent and the decreasing of Drug/COF-V contact area are found. The changes in the interaction energy and the RDF patterns are well in agreement with the adsorption mechanism observed in the presence of EFs. This work highlights using of COF as an effective adsorbent for removing pollutant from aqueous solution.

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一种新型共价有机框架在水环境中动态去除非甾体抗炎生物分子的机制评估
共价有机骨架(COFs)是一类新型的高多孔结晶性物质,作为一种新型吸附剂,具有良好的脱除废水中药物化合物污染的潜力。本文通过分子动力学(MD)模拟研究了一种新型乙烯基功能化COF (COF- v)在不同外加电场(EFs)作用下去除污染水中非甾体抗炎药残留布洛芬(IBP)和萘普生(NPX)的分子机制。MD分析表明,COF-V在单组分体系中对NPX和IBP的载药量为% 100,总相互作用能分别为- 519.66和- 415.21 kJ/mol。此外,在NPX/IBP/COF-V二元体系中,两种药物分子可以同时有效地去除。范德华电位(vdW)是药物残留去除过程中的主要力。随着EF强度的增强,COF-V底物去除废水中生物分子的效果降低,吸附剂的溶剂可及表面积(SASA)值增大,药物/COF-V接触面积减小。相互作用能和RDF模式的变化与电场存在下观察到的吸附机理一致。本文重点介绍了COF作为一种有效的吸附剂去除水溶液中的污染物。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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