Integrative single-cell and bulk RNA-seq analysis identifies lactylation-related signature in osteosarcoma

IF 3.1 4区 生物学 Q1 GENETICS & HEREDITY Functional & Integrative Genomics Pub Date : 2025-03-12 DOI:10.1007/s10142-025-01559-4
Zhou Xie, Xiao Qu, Jun Zhang, Yanran Huang, Zhao Runhan, Dagang Tang, Ningdao Li, Zhule Wang, Xiaoji Luo
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Abstract

Osteosarcoma is the most common bone tumor and a highly aggressive malignant neoplasm. This study aims to elucidate the role of lactylation-related genes (LRGs) in osteosarcoma, with the goal of improving prognostic accuracy and enhancing the efficacy of immunotherapy. Using public datasets, we integrated differential and correlated genes based on single-cell sequencing AUCell scores and performed enrichment analysis and risk model construction on these genes. A total of 277 genes were found to be intricately linked with lactate metabolism. Using the uni-Cox and LASSO algorithm, nine key genes were identified, demonstrating strong predictive power for the prognosis of Osteosarcoma patients. Notably, changes were observed at the levels of immune checkpoints, the tumor microenvironment (TME), drug sensitivity, and immune cell infiltration. This study paves the way for targeted drug interventions, thereby opening avenues for improving clinical outcomes in osteosarcoma.

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综合单细胞和大量RNA-seq分析鉴定骨肉瘤中乳酸化相关特征
骨肉瘤是最常见的骨肿瘤,是一种高度侵袭性的恶性肿瘤。本研究旨在阐明乳酸化相关基因(LRGs)在骨肉瘤中的作用,以提高预后准确性和增强免疫治疗的疗效。利用公共数据集,基于单细胞测序AUCell评分整合差异基因和相关基因,并对这些基因进行富集分析和风险模型构建。总共有277个基因被发现与乳酸代谢有着复杂的联系。利用uni-Cox和LASSO算法,鉴定出9个关键基因,对骨肉瘤患者的预后具有较强的预测能力。值得注意的是,在免疫检查点、肿瘤微环境(TME)、药物敏感性和免疫细胞浸润水平上观察到变化。本研究为靶向药物干预铺平了道路,从而为改善骨肉瘤的临床结果开辟了途径。
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来源期刊
CiteScore
3.50
自引率
3.40%
发文量
92
审稿时长
2 months
期刊介绍: Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?
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