Jeffery S. Horsburgh , Scott Black , Anthony Castronova , Pabitra K. Dash
{"title":"Advancing open and reproducible water data science by integrating data analytics with an online data repository","authors":"Jeffery S. Horsburgh , Scott Black , Anthony Castronova , Pabitra K. Dash","doi":"10.1016/j.envsoft.2025.106422","DOIUrl":null,"url":null,"abstract":"<div><div>Scientific and management challenges in the water domain require synthesis of diverse data. Many analysis tasks are difficult because datasets are large and complex, standard formats are not always agreed upon or mapped to efficient data structures, scientists may lack training for tackling large and complex datasets, and it can be difficult to share and reproduce data science workflows. Overcoming barriers to accessing, organizing, and preparing datasets for analyses can transform how water scientists work. Building on the HydroShare repository's cyberinfrastructure, we created a Python package that automates data retrieval, organization, and curation for analysis, reducing time spent in choosing appropriate data structures and writing data ingestion code. It manages metadata and automates data loading into performant structures consistent with Python's visualization, analysis, and data science capabilities and can be used to build and share more reproducible scientific workflows in HydroShare following FAIR (Findable, Accessible, Interoperable, and Reusable) principles.</div></div>","PeriodicalId":310,"journal":{"name":"Environmental Modelling & Software","volume":"188 ","pages":"Article 106422"},"PeriodicalIF":4.8000,"publicationDate":"2025-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Modelling & Software","FirstCategoryId":"93","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1364815225001069","RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Scientific and management challenges in the water domain require synthesis of diverse data. Many analysis tasks are difficult because datasets are large and complex, standard formats are not always agreed upon or mapped to efficient data structures, scientists may lack training for tackling large and complex datasets, and it can be difficult to share and reproduce data science workflows. Overcoming barriers to accessing, organizing, and preparing datasets for analyses can transform how water scientists work. Building on the HydroShare repository's cyberinfrastructure, we created a Python package that automates data retrieval, organization, and curation for analysis, reducing time spent in choosing appropriate data structures and writing data ingestion code. It manages metadata and automates data loading into performant structures consistent with Python's visualization, analysis, and data science capabilities and can be used to build and share more reproducible scientific workflows in HydroShare following FAIR (Findable, Accessible, Interoperable, and Reusable) principles.
期刊介绍:
Environmental Modelling & Software publishes contributions, in the form of research articles, reviews and short communications, on recent advances in environmental modelling and/or software. The aim is to improve our capacity to represent, understand, predict or manage the behaviour of environmental systems at all practical scales, and to communicate those improvements to a wide scientific and professional audience.