A High-Quality Reference Genome and Comparative Genomics of the Widely Farmed Banded Cricket (Gryllodes sigillatus) Identifies Selective Breeding Targets

IF 2.3 2区 生物学 Q2 ECOLOGY Ecology and Evolution Pub Date : 2025-03-16 DOI:10.1002/ece3.71134
Shangzhe Zhang, Kristin R. Duffield, Bert Foquet, Jose L. Ramirez, Ben M. Sadd, Scott K. Sakaluk, John Hunt, Nathan W. Bailey
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Abstract

Farmed insects have gained attention as an alternative, sustainable source of protein with a lower carbon footprint than traditional livestock. We present a high-quality reference genome for one of the most commonly farmed insects, the banded cricket Gryllodes sigillatus. In addition to its agricultural importance, G. sigillatus is also a model in behavioural and evolutionary ecology research on reproduction and mating systems. We report comparative genomic analyses that clarify the banded cricket's evolutionary history, identify gene family expansions and contractions unique to this lineage, associate these with agriculturally important traits, and identify targets for genome-assisted breeding efforts. The high-quality G. sigillatus genome assembly plus accompanying comparative genomic analyses serve as foundational resources for both applied and basic research on insect farming and behavioural biology, enabling researchers to pinpoint trait-associated genetic variants, unravel functional pathways governing those phenotypes, and accelerate selective breeding efforts to increase the efficacy of large-scale insect farming operations.

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广泛养殖的带状蟋蟀(Gryllodes sigillatus)的高质量参考基因组和比较基因组学确定了选择性育种目标
与传统牲畜相比,养殖昆虫作为一种可替代的、可持续的蛋白质来源,其碳足迹更低,已引起人们的关注。我们提出了一个高质量的参考基因组为最常见的养殖昆虫之一,带状蟋蟀sigillatus。除了在农业上的重要意义外,金鸡在生殖和交配系统的行为和进化生态学研究中也是一个模型。我们报告了比较基因组分析,澄清了带状蟋蟀的进化史,确定了该谱系特有的基因家族扩张和收缩,将这些与农业重要性状联系起来,并确定了基因组辅助育种工作的目标。高质量的sigillatus基因组组装和伴随的比较基因组分析为昆虫养殖和行为生物学的应用和基础研究提供了基础资源,使研究人员能够精确定位性状相关的遗传变异,揭示控制这些表型的功能途径,并加速选择性育种工作,以提高大规模昆虫养殖操作的效率。
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来源期刊
CiteScore
4.40
自引率
3.80%
发文量
1027
审稿时长
3-6 weeks
期刊介绍: Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment. Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.
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