Synthetic population generation with public health characteristics for spatial agent-based models.

IF 3.6 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2025-03-17 eCollection Date: 2025-03-01 DOI:10.1371/journal.pcbi.1012439
Emma Von Hoene, Amira Roess, Hamdi Kavak, Taylor Anderson
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Abstract

Agent-based models (ABMs) simulate the behaviors, interactions, and disease transmission between individual "agents" within their environment, enabling the investigation of the underlying processes driving disease dynamics and how these processes may be influenced by policy interventions. Despite the critical role that characteristics such as health attitudes and vaccination status play in disease outcomes, the initialization of agent populations with these variables is often oversimplified, overlooking statistical relationships between attitudes and other characteristics or lacking spatial heterogeneity. Leveraging population synthesis methods to create populations with realistic health attitudes and protective behaviors for spatial ABMs has yet to be fully explored. Therefore, this study introduces a novel application for generating synthetic populations with protective behaviors and associated attitudes using public health surveys instead of traditional individual-level survey datasets from the census. We test our approach using two different public health surveys to create two synthetic populations representing individuals aged 18 and over in Virginia, U.S., and their COVID-19 vaccine attitudes and uptake as of December 2021. Results show that integrating public health surveys into synthetic population generation processes preserves the statistical relationships between vaccine uptake and attitudes in different demographic groups while capturing spatial heterogeneity at fine scales. This approach can support disease simulations that aim to explore how real populations might respond to interventions and how these responses may lead to demographic or geographic health disparities. Our study also demonstrates the potential for initializing agents with variables relevant to public health domains that extend beyond infectious diseases, ultimately advancing data-driven ABMs for geographically targeted decision-making.

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基于空间主体模型的具有公共卫生特征的综合人口生成。
基于主体的模型(ABMs)模拟个体“主体”在其环境中的行为、相互作用和疾病传播,从而能够调查驱动疾病动态的潜在过程以及这些过程如何受到政策干预的影响。尽管健康态度和疫苗接种状况等特征在疾病结局中发挥着关键作用,但具有这些变量的药剂种群初始化往往过于简化,忽视了态度与其他特征之间的统计关系,或缺乏空间异质性。利用人口综合方法创造具有现实的健康态度和空间ABMs保护行为的人口尚未得到充分探索。因此,本研究引入了一种新的应用,即使用公共卫生调查来生成具有保护行为和相关态度的合成人群,而不是传统的来自人口普查的个人调查数据集。我们使用两项不同的公共卫生调查来测试我们的方法,以创建两个代表美国弗吉尼亚州18岁及以上个人的合成人群,以及他们截至2021年12月对COVID-19疫苗的态度和接受情况。结果表明,将公共卫生调查纳入综合人口生成过程保留了不同人口群体中疫苗接种与态度之间的统计关系,同时在精细尺度上捕捉了空间异质性。这种方法可以支持疾病模拟,旨在探索真实人群对干预措施的反应,以及这些反应如何导致人口或地理上的健康差异。我们的研究还证明了初始化与公共卫生领域相关的变量的潜力,这些变量延伸到传染病之外,最终推进数据驱动的ABMs,用于地理上有针对性的决策。
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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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