Genome sequencing highlights the fungal sclerotium formation of medicinal fungi Polyporus umbellatus.

IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2025-03-17 DOI:10.1186/s12863-025-01311-8
Li Chi, Tianrui Liu, Zhongyi Hua, Pengjie Han, Honghong Jiao, Yuan Yuan
{"title":"Genome sequencing highlights the fungal sclerotium formation of medicinal fungi Polyporus umbellatus.","authors":"Li Chi, Tianrui Liu, Zhongyi Hua, Pengjie Han, Honghong Jiao, Yuan Yuan","doi":"10.1186/s12863-025-01311-8","DOIUrl":null,"url":null,"abstract":"<p><strong>Objectives: </strong>Polyporus umbellatus is a well-known medicinal fungus in Asia. Due to its long growth cycle, wild resources of P. umbellatus are rapidly declining. Research on P. umbellatus growth is scarce, thereby impeding the investigation into the mechanism of sclerotium formation. In this study, the whole genome sequence of P. umbellatus was assembled and annotated.</p><p><strong>Data description: </strong>The generated genome was 79.74 Mb with an N50 of 969.73 Kbp, a GC content of 50.63%, encoding 10,864 protein-coding genes. Additionally, 82 ribosomal RNAs, 488 transfer RNAs, 25 small nuclear RNAs (snRNAs) and 741 micro RNA (miRNAs) were identified. This genomic resource will unveil molecular mechanisms of sclerotium formation and provides insight into the underlying molecular processes in medicinal fungi.</p>","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":"26 1","pages":"17"},"PeriodicalIF":1.9000,"publicationDate":"2025-03-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC genomic data","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s12863-025-01311-8","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Objectives: Polyporus umbellatus is a well-known medicinal fungus in Asia. Due to its long growth cycle, wild resources of P. umbellatus are rapidly declining. Research on P. umbellatus growth is scarce, thereby impeding the investigation into the mechanism of sclerotium formation. In this study, the whole genome sequence of P. umbellatus was assembled and annotated.

Data description: The generated genome was 79.74 Mb with an N50 of 969.73 Kbp, a GC content of 50.63%, encoding 10,864 protein-coding genes. Additionally, 82 ribosomal RNAs, 488 transfer RNAs, 25 small nuclear RNAs (snRNAs) and 741 micro RNA (miRNAs) were identified. This genomic resource will unveil molecular mechanisms of sclerotium formation and provides insight into the underlying molecular processes in medicinal fungi.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
4.90
自引率
0.00%
发文量
0
期刊最新文献
Genome sequencing highlights the fungal sclerotium formation of medicinal fungi Polyporus umbellatus. Unveiling the complete genome sequence of Paenibacillus taichungensis: genomic features and biocontrol potential. A dataset of single-cell transcriptomic atlas of Bama pig and potential marker genes across seven tissues. 217 closed Salmonella reference genomes using PacBio sequencing. Draft genome sequence of the fungal pathogen Penicillium expansum (PPRI25879) isolated in South Africa.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1