A chromosome-level genome assembly of eriophyoid mite Setoptus koraiensis.

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Scientific Data Pub Date : 2025-03-18 DOI:10.1038/s41597-025-04814-2
Zi-Kai Shao, Lei Chen, Jing-Tao Sun, Xiao-Feng Xue
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Abstract

Eriophyoidea represents a highly diverse superfamily of herbivorous mites in the Acariformes, including over 5,000 named species that are distributed worldwide. However, the lack of chromosome-level genome prevents our understanding of the evolution in this group. Here, we report the first chromosome-level genome assembly of Setoptus koraiensis using Illumina, PacBio, and Hi-C sequencing technologies. The assembled genome has a size of 47 Mb with an N50 of 24.53 Mb, anchored into two chromosomes. The chromosome-level genome assembly had a BUSCO completeness of 89%. We identified 5,954 protein-coding genes, with 4,770 genes that could be functionally annotated. This genome provides resources to further understand the genetic and evolution of eriophyoid mites.

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韩国绒斑螨染色体水平的基因组组装。
鞘翅螨总科是鞘翅目中一个高度多样化的草食性螨超科,包括分布在世界各地的5000多个已命名物种。然而,染色体水平基因组的缺失阻碍了我们对这一群体进化的理解。在这里,我们报道了利用Illumina、PacBio和Hi-C测序技术首次对koraisetoptus进行染色体水平的基因组组装。组装的基因组大小为47 Mb, N50为24.53 Mb,锚定在两条染色体上。染色体水平基因组组装的BUSCO完整性为89%。我们鉴定出5954个蛋白质编码基因,其中4770个基因可以进行功能注释。该基因组为进一步了解类角螨的遗传和进化提供了资源。
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来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
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