Deep Learning-Driven Computational Approaches for Studying Intrinsically Disordered Regions in S100-A9.

Q4 Biochemistry, Genetics and Molecular Biology Methods in molecular biology Pub Date : 2025-03-20 DOI:10.1007/7651_2025_617
Gionathan L Distefano, Fabio D'Amico
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Abstract

Intrinsically disordered regions (IDRs) are flexible protein regions and lack a fixed three-dimensional structure, which makes them difficult to study using traditional structural methods. However, artificial intelligence can be helpful in predicting, analyzing, and modeling these regions. This chapter provides a simple protocol for a preliminary-level approach to identifying protein IDRs. By reporting on the S100-A9 protein as a case study example, characterization of the IDRs of this molecule could provide further details on the complex molecular interactions involved in psoriasis, particularly those related to inflammation, immune dysregulation, and keratinocyte behavior.

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基于深度学习驱动的S100-A9内部无序区域研究方法
内在无序区(IDRs)是一种柔性的蛋白质区域,缺乏固定的三维结构,这使得传统的结构方法难以对其进行研究。然而,人工智能可以帮助预测、分析和建模这些区域。本章为鉴定蛋白质idr的初步方法提供了一个简单的协议。通过报道S100-A9蛋白作为案例研究的例子,表征该分子的idr可以提供银屑病中复杂分子相互作用的进一步细节,特别是与炎症、免疫失调和角化细胞行为相关的分子相互作用。
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来源期刊
Methods in molecular biology
Methods in molecular biology Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
2.00
自引率
0.00%
发文量
3536
期刊介绍: For over 20 years, biological scientists have come to rely on the research protocols and methodologies in the critically acclaimed Methods in Molecular Biology series. The series was the first to introduce the step-by-step protocols approach that has become the standard in all biomedical protocol publishing. Each protocol is provided in readily-reproducible step-by-step fashion, opening with an introductory overview, a list of the materials and reagents needed to complete the experiment, and followed by a detailed procedure that is supported with a helpful notes section offering tips and tricks of the trade as well as troubleshooting advice.
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