Cytochrome "nanowires" are physically limited to sub-picoamp currents that suffice for cellular respiration.

IF 4.2 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2025-03-12 eCollection Date: 2025-01-01 DOI:10.3389/fchem.2025.1549441
Matthew J Guberman-Pfeffer, Caleb L Herron
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Abstract

Mineral-respiring microorganisms from hydrothermal vents to terrestrial soils express filaments that electrically connect intracellular respiration to extracellular geochemistry. Filaments dubbed "cytochrome nanowires" (CNs) have been resolved by CryoEM, but whether they are the two-decades-long sought-after physiological "nanowires" remains unproven. To assess their functional competence, we analyzed biological redox conduction in all CNs by computing driving forces in the presence of redox anti-cooperativities, reorganization energies with electronic polarizability, and Marcus rates for diffusive and protein-limited flux models. The chain of heme cofactors in any CN must be densely packed to realize weak (≤0.01 eV) electronic coupling for electron transfer, as evidenced by a single Soret band produced from coincidental absorptions on multiple hemes. Dense packing, in turn, has three consequences: (1) limited driving forces (≤|0.3| eV) due to shared electrostatic microenvironments, (2) strong (≤0.12 eV) redox anti-cooperativities that would accentuate the free energy landscape if the linear heme arrangement did not dictate a contra-thermodynamic oxidation order, and (3) an entropic penalty that is offset by thioether 'tethers' of the hemes to the protein backbone. These linkages physically necessitate the rate-throttling T-stacked motif (10-fold slower than the other highly conserved slip-stacked motif). If the sequence of slip- and T-stacked hemes in the CNs had the fastest known nanosecond rates at every step, a micron-long filament would carry a diffusive 0.02 pA current at a physiological 0.1 V, or a protein-limited current of 0.2 pA. Actual CNs have sub-optimal (≤102-fold lower), but sufficient conductivities for cellular respiration, with at most thousands of filaments needed for total cellular metabolic flux. Reported conductivities once used to argue for metallic-like pili against the cytochrome hypothesis and now attributed to CNs remain inconsistent by 102-105-fold with the physical constraints on biological redox conduction through multiheme architectures.

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细胞色素“纳米线”在物理上被限制在足以进行细胞呼吸的亚皮安电流。
从热液喷口到陆地土壤的矿物呼吸微生物表达出细丝,将细胞内呼吸与细胞外地球化学电连接起来。被称为“细胞色素纳米线”(CNs)的细丝已经被CryoEM解决了,但它们是否是20年来一直追求的生理“纳米线”仍未得到证实。为了评估它们的功能能力,我们通过计算存在氧化还原反协同作用的驱动力,具有电子极化能力的重组能,以及扩散和蛋白质限制通量模型的马库斯速率,分析了所有cnn的生物氧化还原传导。任何CN中的血红素辅因子链必须密集排列才能实现弱(≤0.01 eV)的电子耦合以实现电子传递,这可以从多个血红素的同时吸收产生的单个Soret带中得到证明。密集的填充反过来又有三个后果:(1)由于共享静电微环境,驱动力有限(≤|0.3| eV);(2)如果线性血红素排列没有决定反热力学氧化顺序,则强(≤0.12 eV)氧化还原反协同性会突出自由能格局;(3)血红素与蛋白质主链的硫醚“拴链”抵消了熵罚。这些连接在物理上需要速率节流t -堆叠基序(比其他高度保守的滑动堆叠基序慢10倍)。如果CNs中滑动和t型堆叠的血红素序列在每一步都具有已知的最快纳秒速率,那么一根微米长的灯丝将在生理0.1 V下携带0.02 pA的扩散电流,或者携带0.2 pA的蛋白质限制电流。实际的CNs具有次优(≤102倍低),但足够的细胞呼吸电导率,细胞总代谢通量最多需要数千根细丝。报告的电导率曾经被用来反对细胞色素假说的金属样毛,现在归因于CNs,与多血红素结构对生物氧化还原传导的物理限制仍然不一致102-105倍。
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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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