Exploring shared therapeutic targets for Alzheimer's disease and glioblastoma using network pharmacology and protein-protein interaction approach.

IF 4.2 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2025-03-12 eCollection Date: 2025-01-01 DOI:10.3389/fchem.2025.1549186
Sushma Pradeep, M R Sai Chakith, S R Sindhushree, Pruthvish Reddy, Esther Sushmitha, Madhusudan N Purohit, Divya Suresh, Nanjunda Swamy Shivananju, Ekaterina Silina, Natalia Manturova, Victor Stupin, Shiva Prasad Kollur, Chandan Shivamallu, Raghu Ram Achar
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Abstract

Background: Alzheimer's disease (AD) and glioblastoma (GBM) are complex neurological disorders with distinct pathologies but overlapping molecular mechanisms, including neuroinflammation, oxidative stress, and dysregulated signaling pathways. Despite significant advancements in research, effective therapies targeting both conditions remain elusive. Identifying shared molecular targets and potential therapeutic agents could offer novel treatment strategies for these disorders.

Methodology: The study employs an integrative network pharmacology approach to explore the therapeutic potential of bioactive compounds from Eclipta alba, a medicinal herb known for its neuroprotective and anti-inflammatory properties. A systematic methodology was adopted, starting with network pharmacology analysis using STRING and DisGeNET databases, which identified 617 common genes associated with AD and GBM. Among these, key hub genes-TP53, STAT3, AKT1, and IL6-were prioritized using Cytoscape for network visualization and analysis.

Results: Molecular docking studies were conducted using PyRx software to assess the binding interactions of 26 phytochemicals from Eclipta alba against the identified target genes. Luteolin exhibited the highest binding affinity to IL6 (-7.8 kcal/mol), forming stable hydrogen bonds and hydrophobic interactions. To further validate this interaction, molecular dynamics simulations (MDS) were performed using GROMACS, confirming the stability of the Luteolin-IL6 complex. Additionally, MM-PBSA binding energy calculations using AmberTools (-145.44 kJ/mol) provided further evidence of a strong and stable interaction. Pharmacokinetic and toxicity evaluations, conducted using SwissADME and pkCSM, highlighted luteolin's favorable drug-like properties, including good bioavailability and low toxicity. These findings suggest that luteolin may serve as a promising multi-target therapeutic agent for AD and GBM by modulating key pathological pathways.

Conclusion: The present study provides a strong computational foundation for further in vitro and in vivo validation. The results highlight the potential of luteolin in developing dual-target treatment strategies for neurodegenerative and oncological disorders, offering new avenues for therapeutic advancements.

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利用网络药理学和蛋白-蛋白相互作用方法探索阿尔茨海默病和胶质母细胞瘤的共同治疗靶点。
背景:阿尔茨海默病(AD)和胶质母细胞瘤(GBM)是复杂的神经系统疾病,具有不同的病理,但分子机制重叠,包括神经炎症、氧化应激和信号通路失调。尽管研究取得了重大进展,但针对这两种疾病的有效治疗方法仍然难以捉摸。确定共同的分子靶点和潜在的治疗药物可以为这些疾病提供新的治疗策略。方法:本研究采用综合网络药理学方法来探索黄花草中生物活性化合物的治疗潜力,黄花草是一种以其神经保护和抗炎特性而闻名的草药。采用系统的方法,从使用STRING和DisGeNET数据库的网络药理学分析开始,鉴定出617个与AD和GBM相关的常见基因。其中,关键枢纽基因tp53、STAT3、AKT1和il6被Cytoscape优先排序,用于网络可视化和分析。结果:利用PyRx软件进行分子对接研究,评估了白月牙26种植物化学物质与鉴定目标基因的结合作用。木犀草素与il - 6的结合亲和力最高(-7.8 kcal/mol),形成稳定的氢键和疏水相互作用。为了进一步验证这种相互作用,使用GROMACS进行了分子动力学模拟(MDS),证实了木犀草素- il - 6复合物的稳定性。此外,使用AmberTools计算的MM-PBSA结合能(-145.44 kJ/mol)进一步证明了强而稳定的相互作用。使用SwissADME和pkCSM进行的药代动力学和毒性评估强调了木草素有利的药物样特性,包括良好的生物利用度和低毒性。这些发现提示木犀草素可能通过调节关键病理通路,作为AD和GBM的多靶点治疗药物。结论:本研究为进一步的体外和体内验证提供了坚实的计算基础。这些结果突出了木犀草素在开发神经退行性疾病和肿瘤疾病双靶点治疗策略方面的潜力,为治疗进步提供了新的途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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