Spectroscopy and crystallography define carotenoid oxygenases as a new subclass of mononuclear non-heme FeII enzymes.

IF 4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biological Chemistry Pub Date : 2025-05-01 Epub Date: 2025-03-25 DOI:10.1016/j.jbc.2025.108444
Dory E DeWeese, Michael P Everett, Jeffrey T Babicz, Anahita Daruwalla, Edward I Solomon, Philip D Kiser
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Abstract

Carotenoid cleavage dioxygenases (CCDs) are non-heme FeII enzymes that catalyze the oxidative cleavage of alkene bonds in carotenoids, stilbenoids, and related compounds. How these enzymes control the reaction of dioxygen (O2) with their alkene substrates is unclear. Here, we apply spectroscopy in conjunction with X-ray crystallography to define the iron coordination geometry of a model CCD, CAO1 (Neurospora crassa carotenoid oxygenase 1), in its resting state and following substrate binding and coordination sphere substitutions. Resting CAO1 exhibits a five-coordinate (5C), square pyramidal FeII center that undergoes steric distortion toward a trigonal bipyramidal geometry in the presence of piceatannol. Titrations with the O2-analog, nitric oxide, show a >100-fold increase in iron-nitric oxide affinity upon substrate binding, defining a crucial role for the substrate in activating the FeII site for O2 reactivity. The importance of the 5C FeII structure for reactivity was probed through mutagenesis of the second-sphere Thr151 residue of CAO1, which occludes ligand binding at the sixth coordination position. A T151G substitution resulted in the conversion of the iron center to a six-coordinate state and a 135-fold reduction in apparent catalytic efficiency toward piceatannol compared with the wildtype enzyme. Substrate complexation resulted in partial six-coordinate to 5C conversion, indicating solvent dissociation from the iron center. Additional substitutions at this site demonstrated a general functional importance of the occluding residue within the CCD superfamily. Taken together, these data suggest an ordered mechanism of CCD catalysis occurring via substrate-promoted solvent replacement by O2. CCDs thus represent a new class of mononuclear non-heme FeII enzymes.

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光谱学和晶体学将类胡萝卜素加氧酶定义为单核非血红素FeII酶的一个新亚类。
类胡萝卜素裂解双加氧酶(CCDs)是非血红素FeII酶,催化类胡萝卜素、二苯乙烯和相关化合物中烯键的氧化裂解。这些酶如何控制氧与其烯烃底物的反应尚不清楚。在这里,我们将光谱学与x射线晶体学相结合来定义模型CCD CAO1在静息状态和底物结合和配位球取代后的铁配位几何。静息的CAO1呈现五坐标(5C)的方形锥体FeII中心,在picetanol的存在下,该中心向三角双锥体几何方向发生立体畸变。用O2类似物一氧化氮(NO)滴定表明,在底物结合后,铁-NO的亲和力增加了100倍,这表明底物在激活FeII位点的O2反应活性中起着至关重要的作用。通过诱变CAO1的第二球Thr151残基,在第六个配位位置阻断配体结合,探讨了5C FeII结构对反应性的重要性。T151G取代导致铁中心转变为六坐标(6C)状态,与野生型酶相比,对皮杉醇的表观催化效率降低了135倍。底物络合导致6C到5C的部分转化,表明溶剂从铁中心解离。该位点的其他替换表明了CCD超家族中闭塞残基的一般功能重要性。综上所述,这些数据表明了一种有序的CCD催化机制是通过底物促进的溶剂被O2取代而发生的。因此,ccd代表了一类新的单核非血红素FeII酶。
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Journal of Biological Chemistry
Journal of Biological Chemistry Biochemistry, Genetics and Molecular Biology-Biochemistry
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4.20%
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期刊介绍: The Journal of Biological Chemistry welcomes high-quality science that seeks to elucidate the molecular and cellular basis of biological processes. Papers published in JBC can therefore fall under the umbrellas of not only biological chemistry, chemical biology, or biochemistry, but also allied disciplines such as biophysics, systems biology, RNA biology, immunology, microbiology, neurobiology, epigenetics, computational biology, ’omics, and many more. The outcome of our focus on papers that contribute novel and important mechanistic insights, rather than on a particular topic area, is that JBC is truly a melting pot for scientists across disciplines. In addition, JBC welcomes papers that describe methods that will help scientists push their biochemical inquiries forward and resources that will be of use to the research community.
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