How Transcriptional Bursting and mRNA Production Affect Precise Timing of Cell Lysis Phenomena.

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2025-04-17 Epub Date: 2025-04-07 DOI:10.1021/acs.jpcb.5c01029
Zhuoyan Lyu, Anupam Mondal, Anatoly B Kolomeisky
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Abstract

Bacterial viruses infect bacterial cells and stimulate the production of holin proteins that accumulate in the cellular membranes. When the number of such proteins reaches a threshold, the membrane permeabilizes and the cell is destroyed in the process known as cell lysis. Experimental studies indicate that cell lysis occurs at specific times, although the underlying molecular mechanisms of such precise timing remain not well understood. Recently, a theoretical framework has been introduced to explain these phenomena as a coupling between stochastic processes of holins accumulation in the membrane and breaking the membrane that leads to threshold behavior. However, this approach does not account for many biologically important processes in cell lysis. In this work, we investigated the role of transcriptional bursting and mRNA production on the dynamics of cell lysis. The original stochastic framework is extended, allowing us to evaluate the cell lysis dynamics under more realistic biological conditions using analytical calculations and Monte Carlo computer simulations. It is shown explicitly that the random processes of transcription bursting and mRNA production do not affect the threshold-like dynamics of cell lysis, although they influence the absolute values of the maximal thresholds and their distributions. It is also found that the effect of mRNA production is generally stronger than the effect due to transcriptional bursting. Physical-chemical arguments to explain these observations are presented. Thus, our theoretical analysis suggests that the precise timing of cell lysis is a robust phenomenon despite involving multiple random biochemical processes. Our theoretical approach clarifies some important mechanistic aspects of complex biological processes of cell lysis.

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转录爆发和mRNA的产生如何影响细胞裂解现象的精确时间。
细菌病毒感染细菌细胞并刺激积聚在细胞膜上的holin蛋白的产生。当这类蛋白质的数量达到一个阈值时,细胞膜就会渗透,细胞就会在称为细胞裂解的过程中被破坏。实验研究表明,细胞裂解发生在特定的时间,尽管这种精确时间的潜在分子机制仍未得到很好的理解。最近,一个理论框架被引入来解释这些现象,将其解释为膜中holins积累的随机过程与导致阈值行为的破膜之间的耦合。然而,这种方法不能解释细胞裂解中许多重要的生物学过程。在这项工作中,我们研究了转录破裂和mRNA产生在细胞裂解动力学中的作用。原始的随机框架得到扩展,允许我们使用分析计算和蒙特卡罗计算机模拟来评估更现实的生物条件下的细胞裂解动力学。研究明确表明,转录爆发和mRNA产生的随机过程不影响细胞裂解的阈值样动力学,尽管它们影响最大阈值的绝对值及其分布。研究还发现,mRNA产生的影响通常比转录爆发的影响更强。提出了解释这些观察结果的物理化学论证。因此,我们的理论分析表明,尽管涉及多个随机生化过程,但细胞裂解的精确定时是一个强大的现象。我们的理论方法阐明了细胞裂解复杂生物过程的一些重要机制方面。
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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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