Learning Pairwise Interaction for Extrapolative and Interpretable Machine Learning Interatomic Potentials with Physics-Informed Neural Network.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-04-14 DOI:10.1021/acs.jctc.5c00090
Hoje Chun,Minjoon Hong,Seung Hyo Noh,Byungchan Han
{"title":"Learning Pairwise Interaction for Extrapolative and Interpretable Machine Learning Interatomic Potentials with Physics-Informed Neural Network.","authors":"Hoje Chun,Minjoon Hong,Seung Hyo Noh,Byungchan Han","doi":"10.1021/acs.jctc.5c00090","DOIUrl":null,"url":null,"abstract":"Achieving both robust extrapolation and physical interpretability in machine learning interatomic potentials (ML-IPs) for atomistic simulation remains a significant challenge, particularly in data-scarce areas such as chemical reactions or complex, multicomponent materials at extreme conditions. Here, we present a pairwise-decomposed physics-informed neural network (P2Net) that parametrizes an analytical bond-order potential (BOP) layer to decouple the energy contributions of atomic pairs. By leveraging fundamental physical principles, P2Net demonstrates excellence at extrapolating beyond its training regime and accurately capturing molecular geometries far from equilibrium. The pairwise energy decomposition further empowers the bond analyses for deprotonation and SN2 reactions, which is not easy with most ML-IPs. The atomic pair energy offers how to elucidate the evolution of interatomic interactions as a reaction proceeds. Our methodology highlights enhanced data efficiency in building ML-IPs and facilitates more informative postsimulation analysis, thereby broadening the applicability of ML-IPs to complex and reactive systems.","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"6 1","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2025-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00090","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Achieving both robust extrapolation and physical interpretability in machine learning interatomic potentials (ML-IPs) for atomistic simulation remains a significant challenge, particularly in data-scarce areas such as chemical reactions or complex, multicomponent materials at extreme conditions. Here, we present a pairwise-decomposed physics-informed neural network (P2Net) that parametrizes an analytical bond-order potential (BOP) layer to decouple the energy contributions of atomic pairs. By leveraging fundamental physical principles, P2Net demonstrates excellence at extrapolating beyond its training regime and accurately capturing molecular geometries far from equilibrium. The pairwise energy decomposition further empowers the bond analyses for deprotonation and SN2 reactions, which is not easy with most ML-IPs. The atomic pair energy offers how to elucidate the evolution of interatomic interactions as a reaction proceeds. Our methodology highlights enhanced data efficiency in building ML-IPs and facilitates more informative postsimulation analysis, thereby broadening the applicability of ML-IPs to complex and reactive systems.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用物理信息神经网络学习外推和可解释机器学习原子间势的两两相互作用。
在原子模拟的机器学习原子间势(ml - ip)中实现稳健的外推和物理可解释性仍然是一个重大挑战,特别是在数据稀缺的领域,如化学反应或极端条件下复杂的多组分材料。在这里,我们提出了一个对分解的物理信息神经网络(P2Net),该网络参数化了一个分析键序势(BOP)层,以解耦原子对的能量贡献。通过利用基本的物理原理,P2Net在超越其训练制度外推和准确捕获远离平衡的分子几何形状方面表现出色。双向能量分解进一步增强了对去质子化和SN2反应的键分析,这在大多数ml - ip中是不容易的。原子对能量提供了如何阐明原子间相互作用在反应进行过程中的演化。我们的方法强调了构建ml - ip的数据效率提高,并促进了更多信息的模拟后分析,从而扩大了ml - ip对复杂和反应性系统的适用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
期刊最新文献
A Coarse-Grained MARTINI Model for Mucins. Correction to "COCOMO2: A Coarse-Grained Model for Interacting Folded and Disordered Proteins". Reliable Redox-Potential Simulations of Proteins. Rapid FF Generation via Hessian-Informed Initial Parameters and Automated Refinement. Shortcomings of Linear-Response TD-DFT for ESA Oscillator Strength Calculations.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1