Calculating a Phase Diagram of a Simple Water Model Using Unsupervised Machine Learning on Simulation Data.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-04-14 DOI:10.1021/acs.jctc.4c01456
Peter Ogrin,Tomaz Urbic
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Abstract

We use unsupervised machine learning to construct a phase diagram of a simple 2D rose water model. The machine learning method that we use is a combination of dimensionality reduction methods and clustering algorithms. Two different data sets from the same simulations are used as input data for machine learning. These are angular distribution functions and a set of different thermodynamic, dynamic, and structural properties. To evaluate the efficiency of the method, the machine learning results are compared to manually determined phase diagrams. We show that the methods successfully predict the phase diagram of the rose water model. Furthermore, the phase diagrams obtained from the two data sets are in semiquantitative agreement with each other. Four different solid phases, one liquid phase, and one gaseous phase were determined. The method we have presented is straightforward and easy to implement. It requires almost no prior knowledge of the system to obtain a phase diagram. The method can also be used to distinguish between the different parts of the same phase that have different properties or a sufficiently different structure, and in this way find local differences and anomalies.
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在模拟数据上使用无监督机器学习计算简单水模型的相图。
我们使用无监督机器学习来构建一个简单的二维玫瑰水模型的相图。我们使用的机器学习方法是降维方法和聚类算法的结合。来自相同模拟的两个不同数据集被用作机器学习的输入数据。这些是角分布函数和一组不同的热力学、动力学和结构性质。为了评估该方法的效率,将机器学习结果与人工确定的相图进行比较。结果表明,该方法成功地预测了玫瑰水模型的相图。此外,从两个数据集得到的相图在半定量上是一致的。测定了四种不同的固相、一种液相和一种气相。我们所提出的方法是直接和容易实现的。获得相图几乎不需要系统的先验知识。该方法还可以用于区分具有不同性质或结构完全不同的同一相的不同部分,从而发现局部差异和异常。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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