Machine learning workflows beyond linear models in low-data regimes†

IF 7.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Chemical Science Pub Date : 2025-04-15 DOI:10.1039/D5SC00996K
David Dalmau, Matthew S. Sigman and Juan V. Alegre-Requena
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Abstract

Data-driven methodologies are transforming chemical research by providing chemists with digital tools that accelerate discovery and promote sustainability. In this context, non-linear machine learning algorithms are among the most disruptive technologies in the field and have proven effective for handling large datasets. However, in data-limited scenarios, linear regression has traditionally prevailed due to its simplicity and robustness, while non-linear models have been met with skepticism over concerns related to interpretability and overfitting. In this study, we introduce ready-to-use, automated workflows designed to overcome these challenges. These frameworks mitigate overfitting through Bayesian hyperparameter optimization by incorporating an objective function that accounts for overfitting in both interpolation and extrapolation. Benchmarking on eight diverse chemical datasets, ranging from 18 to 44 data points, demonstrates that when properly tuned and regularized, non-linear models can perform on par with or outperform linear regression. Furthermore, interpretability assessments and de novo predictions reveal that non-linear models capture underlying chemical relationships similarly to their linear counterparts. Ultimately, the automated non-linear workflows presented have the potential to become valuable tools in a chemist's toolbox for studying problems in low-data regimes alongside traditional linear models.

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机器学习工作流程在低数据制度下超越线性模型
数据驱动的方法通过为化学家提供加速发现和促进可持续性的数字工具,正在改变化学研究。在这种情况下,非线性机器学习算法是该领域最具颠覆性的技术之一,并已被证明在处理大型数据集方面是有效的。然而,在数据有限的情况下,线性回归由于其简单性和鲁棒性而传统上占主导地位,而非线性模型则因其可解释性和过拟合而受到质疑。在本研究中,我们介绍了用于克服这些挑战的现成的自动化工作流。这些框架通过贝叶斯超参数优化来缓解过拟合,通过合并一个目标函数来解释插值和外推中的过拟合。对8个不同的化学数据集(从18到44个数据点)进行基准测试表明,当适当调整和正则化时,非线性模型的性能可以与线性回归相当或优于线性回归。此外,可解释性评估和从头预测表明,非线性模型捕获了与线性模型相似的潜在化学关系。最终,所提出的自动化非线性工作流程有可能成为化学家工具箱中有价值的工具,用于与传统线性模型一起研究低数据体系中的问题。
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来源期刊
Chemical Science
Chemical Science CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
14.40
自引率
4.80%
发文量
1352
审稿时长
2.1 months
期刊介绍: Chemical Science is a journal that encompasses various disciplines within the chemical sciences. Its scope includes publishing ground-breaking research with significant implications for its respective field, as well as appealing to a wider audience in related areas. To be considered for publication, articles must showcase innovative and original advances in their field of study and be presented in a manner that is understandable to scientists from diverse backgrounds. However, the journal generally does not publish highly specialized research.
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