Collision-induced dissociation mass spectra of Na+-tagged aldohexoses simulated from first-principles calculations†

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL Physical Chemistry Chemical Physics Pub Date : 2025-04-16 DOI:10.1039/D5CP00579E
Hai Thi Huynh, Jer-Lai Kuo and Cheng-chau Chiu
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Abstract

Understanding the dissociation pattern of saccharides is key to establishing mass spectrometry-based methods as routine methods for identifying oligosaccharides. This work uses energetics at MP2/6-311+G(d,p) level of theory to set up a micro-kinetic model that aims at simulating the processes in collision-induced dissociation mass spectrometry of Na+-tagged glucose, mannose, and galactose. The product concentrations obtained from the simulation can be converted to mass spectra signals, which allow a direct comparison with the experiment. One crucial aspect of this work is the treatment of the system's temperature. In the experiment, the energy for overcoming the barriers of the dissociation processes comes from the activation process, in which the parent ion is brought to collision with neutral gas atoms/molecules. To match this situation, we have assumed that the system's temperature increases linearly and considered different temperature gradients. It could be shown that the temperature gradient only has a negligible impact on the final product distribution and relative signal intensities. All dissociation processes of the considered monosaccharides are finished when the system reaches a temperature between 600 K and 700 K. As the dehydration processes are favored by entropy only at high temperatures >1000 K, the intensities of the dehydration signals seem to be generally underestimated by our calculations. Nevertheless, our model predicts most trends in the signal intensities to be qualitatively correct, including the signal intensity ratio between the dehydration and the so-called cross-ring dissociation channels.

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用第一性原理计算模拟Na+标记醛己糖的碰撞诱导解离质谱
了解糖的解离模式是建立基于质谱的方法作为鉴定低聚糖的常规方法的关键。本研究利用MP2/6-311+G(d,p)理论水平的能量学建立了微动力学模型,旨在模拟Na+标记的葡萄糖、甘露糖和半乳糖的碰撞诱导解离质谱。从模拟中得到的产物浓度可以转换为质谱信号,从而可以与实验进行直接比较。这项工作的一个关键方面是系统温度的处理。在实验中,克服离解过程障碍的能量来自于激活过程,在激活过程中,母离子与中性气体原子/分子发生碰撞。为了匹配这种情况,我们假设系统的温度线性上升,并考虑不同的温度梯度。可以看出,温度梯度对最终产品分布和相对信号强度的影响可以忽略不计。当系统温度达到600 K至700 K之间时,所考虑的单糖的所有解离过程都完成。因为高温下脱水过程受熵的影响更大。1000k时,脱水信号的强度似乎被我们的计算普遍低估了。然而,我们的模型预测信号强度的大多数趋势在定性上是正确的,包括脱水和所谓的交叉环解离通道之间的信号强度比。
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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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