Exact Two-Component Relativistic Polarizable Density Embedding.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-04-18 DOI:10.1021/acs.jctc.5c00014
Ernst Dennis Larsson,Peter Reinholdt,Jacob Kongsted,Erik Donovan Hedegård
{"title":"Exact Two-Component Relativistic Polarizable Density Embedding.","authors":"Ernst Dennis Larsson,Peter Reinholdt,Jacob Kongsted,Erik Donovan Hedegård","doi":"10.1021/acs.jctc.5c00014","DOIUrl":null,"url":null,"abstract":"We have implemented the fragment-based polarizable density embedding (PDE) model within a relativistic framework building on the eXact 2-Component (X2C) relativistic Hamiltonian, thereby taking the PDE method to a relativistic framework. The PDE model provides a robust solution to the electron-leakage problem, and we show that this newly implemented model offers an accurate way to model solvated systems possessing significant relativistic effects. To demonstrate the model's performance, we perform comparative calculations of the K- and L2,3-edge spectra of water-solvated cysteine (both protonated and deprotonated) with the X2C Hamiltonian. Particularly, with counterions such as Na+ in the solvent, electron leakage clearly shows in the older polarizable embedding model through spurious peaks in the spectra. However, when the PDE model is employed, these spurious peaks disappear.","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":"37 1","pages":""},"PeriodicalIF":5.5000,"publicationDate":"2025-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.5c00014","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

We have implemented the fragment-based polarizable density embedding (PDE) model within a relativistic framework building on the eXact 2-Component (X2C) relativistic Hamiltonian, thereby taking the PDE method to a relativistic framework. The PDE model provides a robust solution to the electron-leakage problem, and we show that this newly implemented model offers an accurate way to model solvated systems possessing significant relativistic effects. To demonstrate the model's performance, we perform comparative calculations of the K- and L2,3-edge spectra of water-solvated cysteine (both protonated and deprotonated) with the X2C Hamiltonian. Particularly, with counterions such as Na+ in the solvent, electron leakage clearly shows in the older polarizable embedding model through spurious peaks in the spectra. However, when the PDE model is employed, these spurious peaks disappear.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
精确双分量相对论极化密度嵌入。
我们在基于eXact 2-Component (X2C)相对论哈密顿量的相对论框架中实现了基于片段的极化密度嵌入(PDE)模型,从而将PDE方法引入到相对论框架中。PDE模型为电子泄漏问题提供了一个鲁棒的解决方案,并且我们表明这个新实现的模型为具有显著相对论效应的溶剂化系统提供了一种精确的建模方法。为了证明模型的性能,我们用X2C哈密顿量对水溶剂化半胱氨酸(质子化和去质子化)的K-和L2 - 3边谱进行了比较计算。特别是当溶剂中存在Na+等反离子时,在旧的极化包埋模型中,电子泄漏通过光谱中的伪峰清晰地表现出来。然而,当采用PDE模型时,这些伪峰就消失了。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
期刊最新文献
Free Energy of a Solvent Molecule: Conventional Ideal Gas Approximation versus Experimental Thermodynamics Data. Accelerating Excited-State Calculations of Large Systems with Restricted Boltzmann Machines. Linear-Scaling and Memory-Efficient Implementation of van-der-Waals Interaction (DFT-D3) for Large Systems. Phonon-Focusing and Rattler-Mode Interference in Thermal Conductivity Transitions of the Breathing Metal-Organic Framework MIL-53. Study of Arbitrarily Low Shear Rate Rheology Using Dissipative Particle Dynamics
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1