A complex network-based approach to detect and investigate connectome motifs in the larval Drosophila

IF 6.3 2区 医学 Q1 BIOLOGY Computers in biology and medicine Pub Date : 2025-06-01 Epub Date: 2025-04-25 DOI:10.1016/j.compbiomed.2025.110135
Enrico Corradini , Federica Parlapiano , Arianna Ronci , Giorgio Terracina , Domenico Ursino
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Abstract

Analyzing the connectome of an organism allows us to understand how different areas of its brain communicate with each other and how the structure of the brain is related to its function. Thanks to new technological advances, the connectome of increasingly complex organisms has been reconstructed in recent years. Drosophila melanogaster is currently the most complex organism whose complete connectome is known, both structurally and functionally. In this paper, we aim to contribute to the study of the Drosophila structural connectome by proposing an ad hoc approach for the discovery of network motifs that may be present in it. Unlike previous approaches, which focused on parts of the connectome of complex organisms or the entire connectome of very simple organisms, our approach operates at the whole-brain scale for the most complex organism whose complete connectome is currently known. Furthermore, while previous works have focused on extending existing motif extraction approaches to the connectome case, our approach proposes a motif concept specifically designed for the connectome of an organism. This allows us to find very complex motifs while abstracting them into a few simple types that take into account the brain regions to which the neurons involved belong.
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一个复杂的基于网络的方法来检测和调查幼虫果蝇的连接组基序
分析生物体的连接组可以让我们了解大脑的不同区域是如何相互交流的,以及大脑的结构是如何与它的功能联系在一起的。由于新技术的进步,近年来越来越复杂的生物体的连接体已经被重建。黑腹果蝇是目前已知的最复杂的生物,其完整的连接体在结构和功能上都是如此。在本文中,我们的目标是通过提出一种特殊的方法来发现可能存在于果蝇结构连接体中的网络基序,从而为果蝇结构连接体的研究做出贡献。与之前的方法不同,我们的方法专注于复杂生物体的部分连接体或非常简单生物体的整个连接体,我们的方法在全脑范围内运作,用于目前已知的最复杂生物体的完整连接体。此外,虽然以前的工作主要集中在将现有的基序提取方法扩展到连接体的情况下,但我们的方法提出了一个专门为生物体的连接体设计的基序概念。这使我们能够找到非常复杂的主题,同时将它们抽象成几种简单的类型,并考虑到相关神经元所属的大脑区域。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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