EMBL sequence submission system--an object-oriented approach to developing interactive data collection systems through the WWW.

B Shomer
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引用次数: 2

Abstract

Motivation: To enable a new way of submitting sequence information to the EMBL nucleotide database through the WWW. This process of data submission is long and complex, and calls for efficient and user-friendly mechanisms for collection and validation of information.

Results: Described here is a generic, object-oriented data-submission system that is being used for the EMBL database, but can easily, be tailored to serve several data-submission schemes with a relatively short development and implementation time. The program provides the user with a friendly interface that breaks the complex task into smaller, more manageable tasks and, on the other hand, acts as a pre-filter, scanning errors online.

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EMBL序列提交系统——一种通过WWW开发交互式数据收集系统的面向对象方法。
动机:通过WWW实现向EMBL核苷酸数据库提交序列信息的新方法。这一数据提交过程漫长而复杂,需要有效和用户友好的机制来收集和验证信息。结果:这里描述的是一个通用的、面向对象的数据提交系统,该系统用于EMBL数据库,但是可以很容易地进行定制,以在相对较短的开发和实现时间内服务于几种数据提交方案。该程序为用户提供了一个友好的界面,将复杂的任务分解成更小,更易于管理的任务,另一方面,充当预过滤器,在线扫描错误。
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A genetic algorithm for multiple molecular sequence alignment. Displaying the information contents of structural RNA alignments: the structure logos. Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements. XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
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