End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.

A Rambaut, P H Harvey, S Nee
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引用次数: 52

Abstract

Motivation: Phylogenetic trees constructed from molecular sequences contain information about the evolutionary or population dynamical processes that created them. Here we describe a computer package (End-Epi) that uses graphical methods to allow researchers to make inferences about these processes from their data. Statistical analyses can be performed to test the consistency of the data with various competing hypotheses.

Availability: End-Epi can be obtained by WWW from http://evolve.zoo.ox.ac.uk/ and by anonymous FTP from ftp://evolve.zoo.ox.ac.uk/packages/End-Epi10.hqx. This file contains the compiled application, the manual and a test tree.

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End-Epi:从分子序列推断系统发育和种群动态过程的应用。
动机:由分子序列构建的系统发育树包含了创造它们的进化或种群动态过程的信息。在这里,我们描述了一个计算机包(End-Epi),它使用图形方法允许研究人员从他们的数据中推断这些过程。可以进行统计分析,以检验数据与各种相互竞争的假设的一致性。可用性:End-Epi可通过WWW从http://evolve.zoo.ox.ac.uk/获取,也可通过匿名FTP从ftp://evolve.zoo.ox.ac.uk/packages/End-Epi10.hqx获取。该文件包含编译后的应用程序、手册和测试树。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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A genetic algorithm for multiple molecular sequence alignment. Displaying the information contents of structural RNA alignments: the structure logos. Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements. XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
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