A platform-independent graphical user interface for SEQSEE and XALIGN.

D S Wishart, S Fortin, D R Woloschuk, W Wong, T Rosborough, G Van Domselaar, J Schaeffer, D Szafron
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引用次数: 8

Abstract

SEQSEE (Wishart et cil., 1994a) and XALIGN (Wishart et cil., 1994b) are two text-based, menu-driven programs developed specifically for comprehensive protein sequence analysis. Originally compiled to run on SUN and SGI workstations only, SEQSEE and XALIGN have been distributed to more than 300 laboratories around the world. Both programs have been used in a variety of applications ranging from routine sequence analysis to the identification of previously unknown sequence relationships (Upton et cil., 1992, 1993; Dulhanty and Riordan, 1994). Since releasing these programs, we have received numerous requests asking if they could be ported to additional computer platforms (Macintosh and PC) or if the text-based menus could be replaced with a more friendly graphical user interface (GUI).
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SEQSEE和XALIGN的独立于平台的图形用户界面。
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A genetic algorithm for multiple molecular sequence alignment. Displaying the information contents of structural RNA alignments: the structure logos. Q-RT-PCR: data analysis software for measurement of gene expression by competitive RT-PCR. SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements. XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences.
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