The Dogfish Scyliorhinus canicula: A Reference in Jawed Vertebrates.

CSH protocols Pub Date : 2008-12-01 DOI:10.1101/pdb.emo111
Marion Coolen, Arnaud Menuet, Danièle Chassoux, Claudia Compagnucci, Sébastien Henry, Laurent Lévèque, Corinne Da Silva, Frédérick Gavory, Sylvie Samain, Patrick Wincker, Claude Thermes, Yves D'Aubenton-Carafa, Isabel Rodriguez-Moldes, Gavin Naylor, Michael Depew, Pascal Sourdaine, Sylvie Mazan
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引用次数: 62

Abstract

INTRODUCTIONDue to their large size and long generation times, chondrichthyans have been largely ignored by geneticists. However, their key phylogenetic position makes them ideal subjects to study the molecular bases of the important morphological and physiological innovations that characterize jawed vertebrates. Such analyses are crucial to understanding the origin of the complex genetic mechanisms unraveled in osteichthyans. The small spotted dogfish Scyliorhinus canicula, a representative of the largest order of extant sharks, presents a number of advantages in this context. Due to its relatively small size among sharks, its abundance, and easy maintenance, the dogfish has been an important model in comparative anatomy and physiology for more than a century. Recently, revived interest has occurred with the development of large-scale transcriptomic and genomic resources, together with the establishment of facilities allowing massive egg and embryo production. These new tools open the way to molecular analyses of the elaborate physiological and sensory systems used by sharks. They also make it possible to take advantage of unique characteristics of these species, such as organ zonation, in analyses of cell proliferation and differentiation. Finally, they offer important perspectives to evolutionary developmental biology that will provide a better understanding of the origin and diversifications of jawed vertebrates. The dogfish whole-genome sequence, which may shortly become accessible, should establish this species as an essential shark reference, complementary to other chondrichthyan models. These analyses are likely to reveal an organism of an underestimated complexity, far from the primitive prototypical gnathostome anticipated in gradistic views.

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角鲨:有颌脊椎动物的参考文献。
由于它们体型庞大,世代时间长,软骨鱼在很大程度上被遗传学家所忽视。然而,它们的关键系统发育位置使它们成为研究颌骨脊椎动物重要形态和生理创新分子基础的理想对象。这样的分析对于理解骨鱼类复杂的遗传机制的起源是至关重要的。小斑点角鲨Scyliorhinus canicula是现存最大鲨鱼目的代表,在这种情况下表现出许多优势。一个多世纪以来,角鲨一直是比较解剖学和生理学的重要模型,因为它在鲨鱼中相对较小,数量多,易于维护。最近,随着大规模转录组学和基因组资源的发展,以及允许大量卵子和胚胎生产的设施的建立,重新引起了人们的兴趣。这些新工具为对鲨鱼复杂的生理和感觉系统进行分子分析开辟了道路。它们还可以利用这些物种的独特特征,如器官分带,来分析细胞增殖和分化。最后,它们为进化发育生物学提供了重要的视角,将更好地理解颌脊椎动物的起源和多样性。角鲨的全基因组序列,可能很快就可以获得,应该建立这个物种作为重要的鲨鱼参考,补充其他软骨鱼模型。这些分析很可能揭示了一种复杂性被低估的生物,与渐变观点所预期的原始原型牙颌动物相去甚远。
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