Towards crystal structure prediction of complex organic compounds--a report on the fifth blind test.

IF 1.9 3区 化学 Acta Crystallographica Section B-structural Science Pub Date : 2011-12-01 Epub Date: 2011-11-17 DOI:10.1107/S0108768111042868
David A Bardwell, Claire S Adjiman, Yelena A Arnautova, Ekaterina Bartashevich, Stephan X M Boerrigter, Doris E Braun, Aurora J Cruz-Cabeza, Graeme M Day, Raffaele G Della Valle, Gautam R Desiraju, Bouke P van Eijck, Julio C Facelli, Marta B Ferraro, Damian Grillo, Matthew Habgood, Detlef W M Hofmann, Fridolin Hofmann, K V Jovan Jose, Panagiotis G Karamertzanis, Andrei V Kazantsev, John Kendrick, Liudmila N Kuleshova, Frank J J Leusen, Andrey V Maleev, Alston J Misquitta, Sharmarke Mohamed, Richard J Needs, Marcus A Neumann, Denis Nikylov, Anita M Orendt, Rumpa Pal, Constantinos C Pantelides, Chris J Pickard, Louise S Price, Sarah L Price, Harold A Scheraga, Jacco van de Streek, Tejender S Thakur, Siddharth Tiwari, Elisabetta Venuti, Ilia K Zhitkov
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Abstract

Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi-flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories - a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion-corrected density functional theory (DFT-D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.

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实现复杂有机化合物的晶体结构预测--第五次盲测报告。
继之前的晶体结构预测盲测(CSP1999、CSP2001、CSP2004 和 CSP2007)取得成功之后,剑桥晶体数据中心又组织了第五次此类合作项目(CSP2010)。参与小组使用了一系列方法,以评估当前计算方法预测六种有机分子晶体结构的能力,这六种有机分子被选为此次盲测的目标。前四个目标(两个刚性分子、一个半柔性分子和一个 1:1 盐)符合 CSP2007 目标的标准,而最后两个目标则属于两个新的挑战类别--一个更大、更柔性的分子和一个具有多种多态性的水合物。每个小组为其尝试的每个目标提交了三项预测。每个目标都至少有一个预测成功,其中有两个小组成功预测出了大柔性分子的结构,获得了第一名。结果表明,虽然成功预测出三种最小分子结构的小组数量不及 CSP2007,但现在有证据表明,色散校正密度泛函理论(DFT-D)等方法能够可靠地预测出这些分子的结构。研究结果还凸显了更为复杂的系统所带来的诸多挑战,并表明仍有一些问题有待克服。
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5.30%
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审稿时长
6-12 weeks
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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