The polymorphs of ROY: application of a systematic crystal structure prediction technique.

IF 1.9 3区 化学 Acta Crystallographica Section B-structural Science Pub Date : 2012-12-01 Epub Date: 2012-11-16 DOI:10.1107/S0108768112045636
Manolis Vasileiadis, Andrei V Kazantsev, Panagiotis G Karamertzanis, Claire S Adjiman, Constantinos C Pantelides
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引用次数: 50

Abstract

We investigate the ability of current ab initio crystal structure prediction techniques to identify the polymorphs of 5-methyl-2-[(2-nitrophenyl)amino]-3-thiophenecarbonitrile, also known as ROY because of the red, orange and yellow colours of its polymorphs. We use a methodology combining the generation of a large number of structures based on a computationally inexpensive model using the CrystalPredictor global search algorithm, and the further minimization of the most promising of these structures using the CrystalOptimizer local minimization algorithm which employs an accurate, yet efficiently constructed, model based on isolated-molecule quantum-mechanical calculations. We demonstrate that this approach successfully predicts the seven experimentally resolved structures of ROY as lattice-energy minima, with five of these structures being within the 12 lowest energy structures predicted. Some of the other low-energy structures identified are likely candidates for the still unresolved polymorphs of this molecule. The relative stability of the predicted structures only partially matches that of the experimentally resolved polymorphs. The worst case is that of polymorph ON, whose relative energy with respect to Y is overestimated by 6.65 kJ mol(-1). This highlights the need for further developments in the accuracy of the energy calculations.

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ROY的多晶型:系统晶体结构预测技术的应用。
我们研究了当前从头算晶体结构预测技术识别5-甲基-2-[(2-硝基苯基)氨基]-3-噻吩碳腈多态性的能力,也被称为ROY,因为其多态性的红色,橙色和黄色。我们使用的方法结合了基于使用CrystalPredictor全局搜索算法的计算廉价模型的大量结构的生成,以及使用CrystalOptimizer局部最小化算法的最有希望的这些结构的进一步最小化,该算法采用了基于孤立分子量子力学计算的精确且有效构建的模型。我们证明了这种方法成功地预测了7种实验分解的ROY结构作为晶格能量最小值,其中5种结构在预测的12种最低能量结构内。其他一些已确定的低能量结构可能是该分子尚未确定的多态性的候选者。预测结构的相对稳定性仅部分与实验解决的多晶相匹配。最坏的情况是多晶态ON,其相对于Y的能量被高估了6.65 kJ mol(-1)。这突出表明需要进一步提高能量计算的准确性。
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来源期刊
自引率
5.30%
发文量
0
审稿时长
6-12 weeks
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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