Three-dimensional hydrogen-bonded structures in the hydrated proton-transfer salts of isonipecotamide with the dicarboxylic oxalic and adipic acid homologues.

IF 0.8 4区 化学 Acta crystallographica. Section C, Crystal structure communications Pub Date : 2013-10-01 Epub Date: 2013-09-07 DOI:10.1107/S010827011302430X
Graham Smith, Urs D Wermuth
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Abstract

The structures of the 1:1 hydrated proton-transfer compounds of isonipecotamide (piperidine-4-carboxamide) with oxalic acid, 4-carbamoylpiperidinium hydrogen oxalate dihydrate, C6H13N2O(+)·C2HO4(-)·2H2O, (I), and with adipic acid, bis(4-carbamoylpiperidinium) adipate dihydrate, 2C6H13N2O(+)·C6H8O4(2-)·2H2O, (II), are three-dimensional hydrogen-bonded constructs involving several different types of enlarged water-bridged cyclic associations. In the structure of (I), the oxalate monoanions give head-to-tail carboxylic acid O-H···O(carboxyl) hydrogen-bonding interactions, forming C(5) chain substructures which extend along a. The isonipecotamide cations also give parallel chain substructures through amide N-H···O hydrogen bonds, the chains being linked across b and down c by alternating water bridges involving both carboxyl and amide O-atom acceptors and amide and piperidinium N-H···O(carboxyl) hydrogen bonds, generating cyclic R4(3)(10) and R3(2)(11) motifs. In the structure of (II), the asymmetric unit comprises a piperidinium cation, half an adipate dianion, which lies across a crystallographic inversion centre, and a solvent water molecule. In the crystal structure, the two inversion-related cations are interlinked through the two water molecules, which act as acceptors in dual amide N-H···O(water) hydrogen bonds, to give a cyclic R4(2)(8) association which is conjoined with an R4(4)(12) motif. Further N-H···O(water), water O-H···O(amide) and piperidinium N-H···O(carboxyl) hydrogen bonds give the overall three-dimensional structure. The structures reported here further demonstrate the utility of the isonipecotamide cation as a synthon for the generation of stable hydrogen-bonded structures. The presence of solvent water molecules in these structures is largely responsible for the non-occurrence of the common hydrogen-bonded amide-amide dimer, promoting instead various expanded cyclic hydrogen-bonding motifs.

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异烟酰胺水合质子转移盐与二羧基草酸和己二酸同源物的三维氢键结构。
异烟酰胺(胡椒啶-4-carboxamide)与草酸、4-氨基甲酰基胡椒啶草酸氢二水合物C6H13N2O(+)·C2HO4(-)·2H2O (I)、与己二酸二水合物(4-氨基甲酰基胡椒啶)己二酸二水合物2C6H13N2O(+)·C6H8O4(2-)·2H2O (II)的1:1水合质子转移化合物的结构是三维氢键结构,涉及几种不同类型的放大水桥环缔合。在(I)的结构中,草酸单阴离子形成首尾羧酸O- h··O(羧基)氢键相互作用,形成沿a延伸的C(5)链亚结构。异烟酰胺阳离子也通过酰胺的N-H··O氢键形成平行的链亚结构,这些链通过羧基和酰胺的O原子受体以及酰胺和哌啶的N-H··O(羧基)氢键通过交替的水桥连接在b和C上。生成循环R4(3)(10)和R3(2)(11)基序。在(II)的结构中,不对称单元包括一个胡椒离子、半个己二酸离子(横跨晶体倒置中心)和一个溶剂水分子。在晶体结构中,两个反转相关的阳离子通过两个水分子相互连接,在双酰胺N-H···O(水)氢键中作为受体,形成环状R4(2)(8)结合,并与R4(4)(12)基序相连。进一步的N-H··O(水)、O- h··O(酰胺)和哌酸N-H··O(羧基)氢键构成了整体的三维结构。本文报道的结构进一步证明了异丙酰胺阳离子作为生成稳定氢键结构的合成物的实用性。溶剂水分子在这些结构中的存在主要是导致常见的氢键酰胺-酰胺二聚体不存在的原因,而是促进了各种扩展的环状氢键基序。
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期刊介绍: Acta Crystallographica Section C: Structural Chemistry is continuing its transition to a journal that publishes exciting science with structural content, in particular, important results relating to the chemical sciences. Section C is the journal of choice for the rapid publication of articles that highlight interesting research facilitated by the determination, calculation or analysis of structures of any type, other than macromolecular structures. Articles that emphasize the science and the outcomes that were enabled by the study are particularly welcomed. Authors are encouraged to include mainstream science in their papers, thereby producing manuscripts that are substantial scientific well-rounded contributions that appeal to a broad community of readers and increase the profile of the authors.
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