Fourth generation detour matrix-based topological descriptors for QSAR/QSPR - Part-2: application in development of models for prediction of biological activity.

Q4 Pharmacology, Toxicology and Pharmaceutics International Journal of Computational Biology and Drug Design Pub Date : 2014-01-01 Epub Date: 2014-01-09 DOI:10.1504/IJCBDD.2014.058583
Rakesh Kumar Marwaha, A K Madan
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Abstract

Augmented path eccentric connectivity topochemical indices (reported in part-1 of the manuscript) along with 42 diverse non-correlating molecular descriptors (shortlisted from a large pool of 2D and 3D MDs) were successfully utilised for the development of models through decision tree, random forest and moving average analysis for the prediction of antitubercular activity of aza and diazabiphenyl analogues of active compound (6S)-2-Nitro-{[4-(trifluoromethoxy)benzyl]oxy}-6,7-dihydro-5H-imidazo[2,1-b][1,3] oxazine (PA-824). The statistical significance of the proposed models was assessed through overall accuracy of prediction, intercorrelation analysis, sensitivity, specificity and Matthew's correlation coefficient (MCC). The accuracy of prediction of the proposed models varied from a minimum of 81% to a maximum of ∼99%. High accuracy of prediction amalgamated with high MCC values clearly indicates robustness of the proposed models. The said models offer a vast potential for providing lead structures for the development of potent antitubercular drugs.

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QSAR/QSPR -的第四代绕行矩阵拓扑描述符第二部分:生物活性预测模型在开发中的应用。
增强路径偏心连通性拓扑化学指数(在手稿的第一部分中报告)以及42种不同的非相关分子描述符(从大量2D和3D MDs中入围)成功地用于通过决策树开发模型。随机森林和移动平均分析预测活性化合物(6S)-2-硝基-{[4-(三氟甲氧基)苄基]氧}-6,7-二氢- 5h -咪唑[2,1-b][1,3]嗪(pa - 824)。通过预测总体准确性、相关分析、敏感性、特异性和马修相关系数(Matthew's correlation coefficient, MCC)评估模型的统计学显著性。所提出模型的预测精度最低为81%最大为∼99%较高的预测精度与较高的MCC值相结合,清楚地表明了所提出模型的鲁棒性。上述模型为开发强效抗结核药物提供先导结构提供了巨大的潜力。
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来源期刊
International Journal of Computational Biology and Drug Design
International Journal of Computational Biology and Drug Design Pharmacology, Toxicology and Pharmaceutics-Drug Discovery
CiteScore
1.00
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0.00%
发文量
8
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