Estimating age-dependent per-encounter chlamydia trachomatis acquisition risk via a Markov-based state-transition model.

Journal of clinical bioinformatics Pub Date : 2014-04-25 eCollection Date: 2014-01-01 DOI:10.1186/2043-9113-4-7
Yu Teng, Nan Kong, Wanzhu Tu
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Abstract

Background: Chlamydial infection is a common bacterial sexually transmitted infection worldwide, caused by C. trachomatis. The screening for C. trachomatis has been proven to be successful. However, such success is not fully realized through tailoring the recommended screening strategies for different age groups. This is partly due to the knowledge gap in understanding how the infection is correlated with age. In this paper, we estimate age-dependent risks of acquiring C. trachomatis by adolescent women via unprotected heterosexual acts.

Methods: We develop a time-varying Markov state-transition model and compute the incidences of chlamydial infection at discrete age points by simulating the state-transition model with candidate per-encounter acquisition risks and sampled numbers of unit-time unprotected coital events at different age points. We solve an optimization problem to identify the age-dependent estimates that offer the closest matches to the observed infection incidences. We also investigate the impact of antimicrobial treatment effectiveness on the parameter estimates and the differences between the acquisition risks for the first-time infections and repeated infections.

Results: Our case study supports the beliefs that age is an inverse predictor of C. trachomatis transmission and that protective immunity developed after initial infection is only partial.

Conclusions: Our modeling method offers a flexible and expandable platform for investigating STI transmission.

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通过基于马尔可夫的状态转换模型估算与年龄相关的每次沙眼衣原体感染风险。
背景:衣原体感染是全球常见的细菌性性传播感染,由沙眼衣原体引起。沙眼衣原体筛查已被证明是成功的。然而,针对不同年龄段人群的建议筛查策略并没有完全取得成功。这部分是由于在了解感染与年龄的相关性方面存在知识差距。在本文中,我们估算了青春期女性通过无保护措施的异性性行为感染沙眼衣原体的年龄风险:方法:我们建立了一个时变马尔可夫状态转换模型,并通过模拟该状态转换模型与候选的每次感染风险和不同年龄点的单位时间无保护性交事件的抽样数量,计算出离散年龄点的衣原体感染发生率。我们解决了一个优化问题,以确定与观察到的感染发生率最接近的年龄估计值。我们还研究了抗菌治疗效果对参数估计的影响,以及首次感染和重复感染的感染风险差异:结果:我们的案例研究支持以下观点:年龄是沙眼衣原体传播的反向预测因子,初次感染后产生的保护性免疫仅是部分免疫:我们的建模方法为调查性传播疾病的传播提供了一个灵活、可扩展的平台。
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