Substrate selectivity of bacterial monoacylglycerol lipase based on crystal structure.

Toshiharu Tsurumura, Hideaki Tsuge
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引用次数: 7

Abstract

Lipases, which are conserved from bacteria to mammals, catalyze the hydrolysis of acylglycerol to free fatty acids and glycerol. Monoacylglycerol lipase (MGL) specifically catalyzes the hydrolysis of monoacylglycerol. Although there have been numerous studies of the structure of lipases, there have been few studies of MGL. Here, we report the crystal structure of authentic MGL isolated from Bacillus sp. H257 (bMGL). The crystal diffracts to 1.96 Å resolution. It belongs to space group P21212, and the unit cell parameters are a=99.7 Å, b=106.1 Å and c=43.0 Å. As in other lipases, three structural features for lipase activity are conserved in bMGL: the glycine-X-serine-X-glycine motif, catalytic triad and cap region. The structure of bMGL appears to be closed, as the cap region covers the active site entrance. The isolated bMGL hydrolyzed 2-AG, a known human MGL-specific substrate. Based on a 2-AG bound model, we discuss the substrate selectivity. The functional and structural features of bMGL provide insight how its substrate selectivity is determined and how specific inhibitors of bacterial MGL could be designed, which may be useful for development of novel antibiotics.

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基于晶体结构的细菌单酰基甘油脂肪酶的底物选择性。
脂肪酶,从细菌到哺乳动物都是保守的,催化酰基甘油水解为游离脂肪酸和甘油。单酰基甘油脂肪酶(MGL)专门催化单酰基甘油的水解。虽然对脂肪酶结构的研究很多,但对MGL的研究却很少。本文报道了从芽孢杆菌H257 (Bacillus sp. H257, bMGL)中分离得到的MGL的晶体结构。晶体衍射到1.96 Å分辨率。属于空间群P21212,单元格参数为a=99.7 Å, b=106.1 Å, c=43.0 Å。与其他脂肪酶一样,bMGL中保留了脂肪酶活性的三个结构特征:甘氨酸- x -丝氨酸- x -甘氨酸基序、催化三联体和帽区。bMGL的结构看起来是封闭的,因为帽区覆盖了活动场地的入口。分离的bMGL可水解2-AG,这是一种已知的人mgl特异性底物。基于2-AG键合模型,我们讨论了底物选择性。bMGL的功能和结构特征揭示了其底物选择性是如何确定的,以及如何设计细菌MGL的特异性抑制剂,这可能对开发新型抗生素有用。
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Structural Genomics: General Applications Classification of ligand molecules in PDB with graph match-based structural superposition HOMCOS: an updated server to search and model complex 3D structures. NLDB: a database for 3D protein-ligand interactions in enzymatic reactions. Toward the next step in G protein-coupled receptor research: a knowledge-driven analysis for the next potential targets in drug discovery
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