Building cyberinfrastructure for the reuse and reproducibility of complex hydrologic modeling studies

IF 4.8 2区 环境科学与生态学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Environmental Modelling & Software Pub Date : 2023-06-01 DOI:10.1016/j.envsoft.2023.105689
Iman Maghami , Ashley Van Beusekom , Lauren Hay , Zhiyu Li , Andrew Bennett , YoungDon Choi , Bart Nijssen , Shaowen Wang , David Tarboton , Jonathan L. Goodall
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引用次数: 3

Abstract

Building cyberinfrastructure for the reuse and reproducibility of large-scale hydrologic modeling studies requires overcoming a number of data management and software architecture challenges. The objective of this research is to advance the cyberinfrastructure needed to overcome some of these challenges to make such computational hydrologic studies easier to reuse and reproduce. We present novel cyberinfrastructure capable of integrating HydroShare (an online data repository), CyberGIS-Jupyter for Water and high performance computing (HPC) resources (computational environments), and the Structure for Unifying Multiple Modeling Alternatives (SUMMA) hydrologic modeling framework through its application programming interface for orchestrating model runs. The cyberinfrastructure is demonstrated for a complex computational modeling study on a contiguous United States dataset. We present and discuss key capabilities of the cyberinfrastructure including (1) containerization for portability across compute environments, (2) Globus for large data transfers, (3) a Jupyter gateway to HPC environments, and (4) Jupyter notebooks for capturing the modeling workflows.

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为复杂水文模型研究的重用和再现性建立网络基础设施
为大规模水文建模研究的重用和再现性建立网络基础设施需要克服许多数据管理和软件架构方面的挑战。本研究的目的是推进克服这些挑战所需的网络基础设施,使此类计算水文研究更容易重复使用和复制。我们提出了新的网络基础设施,能够集成HydroShare(在线数据存储库),用于水和高性能计算(HPC)资源(计算环境)的CyberGIS-Jupyter,以及通过其用于协调模型运行的应用程序编程接口的统一多种建模替代方案(SUMMA)水文建模框架的结构。该网络基础设施在一个连续的美国数据集上进行了复杂的计算建模研究。我们提出并讨论了网络基础设施的关键功能,包括(1)跨计算环境可移植性的容器化,(2)用于大数据传输的Globus,(3)用于HPC环境的Jupyter网关,以及(4)用于捕获建模工作流的Jupyter笔记本。
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来源期刊
Environmental Modelling & Software
Environmental Modelling & Software 工程技术-工程:环境
CiteScore
9.30
自引率
8.20%
发文量
241
审稿时长
60 days
期刊介绍: Environmental Modelling & Software publishes contributions, in the form of research articles, reviews and short communications, on recent advances in environmental modelling and/or software. The aim is to improve our capacity to represent, understand, predict or manage the behaviour of environmental systems at all practical scales, and to communicate those improvements to a wide scientific and professional audience.
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