A novel delta current method for transport stoichiometry estimation.

Q1 Biochemistry, Genetics and Molecular Biology BMC Biophysics Pub Date : 2014-12-11 eCollection Date: 2014-01-01 DOI:10.1186/s13628-014-0014-2
Xuesi M Shao, Liyo Kao, Ira Kurtz
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引用次数: 7

Abstract

Background: The ion transport stoichiometry (q) of electrogenic transporters is an important determinant of their function. q can be determined by the reversal potential (Erev) if the transporter under study is the only electrogenic transport mechanism or a specific inhibitor is available. An alternative approach is to calculate delta reversal potential (ΔErev) by altering the concentrations of the transported substrates. This approach is based on the hypothesis that the contributions of other channels and transporters on the membrane to Erev are additive. However, Erev is a complicated function of the sum of different conductances rather than being additive.

Results: We propose a new delta current (ΔI) method based on a simplified model for electrogenic secondary active transport by Heinz (Electrical Potentials in Biological Membrane Transport, 1981). ΔI is the difference between two currents obtained from altering the external concentration of a transported substrate thereby eliminating other currents without the need for a specific inhibitor. q is determined by the ratio of ΔI at two different membrane voltages (V1 and V2) where q = 2RT/(F(V2 -V1))ln(ΔI2/ΔI1) + 1. We tested this ΔI methodology in HEK-293 cells expressing the elctrogenic SLC4 sodium bicarbonate cotransporters NBCe2-C and NBCe1-A, the results were consistent with those obtained with the Erev inhibitor method. Furthermore, using computational simulations, we compared the estimates of q with the ΔErev and ΔI methods. The results showed that the ΔErev method introduces significant error when other channels or electrogenic transporters are present on the membrane and that the ΔI equation accurately calculates the stoichiometric ratio.

Conclusions: We developed a ΔI method for estimating transport stoichiometry of electrogenic transporters based on the Heinz model. This model reduces to the conventional reversal potential method when the transporter under study is the only electrogenic transport process in the membrane. When there are other electrogenic transport pathways, ΔI method eliminates their contribution in estimating q. Computational simulations demonstrated that the ΔErev method introduces significant error when other channels or electrogenic transporters are present and that the ΔI equation accurately calculates the stoichiometric ratio. This new ΔI method can be readily extended to the analysis of other electrogenic transporters in other tissues.

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一种新的输运化学计量估计的δ电流方法。
背景:电致转运体的离子传输化学计量学(q)是决定其功能的重要因素。如果所研究的转运体是唯一的电致转运机制或有特定的抑制剂可用,则q可以由逆转电位(Erev)确定。另一种方法是通过改变输送底物的浓度来计算反转电位(ΔErev)。这种方法是基于膜上其他通道和转运体对Erev的贡献是相加性的假设。然而,Erev是不同电导之和的复杂函数,而不是相加的。结果:我们提出了一种新的delta电流(ΔI)方法,该方法基于Heinz (Electrical Potentials in Biological Membrane transport, 1981)的电致二次主动传输的简化模型。ΔI是通过改变运输底物的外部浓度从而消除其他电流而不需要特定抑制剂而获得的两个电流之间的差值。q由ΔI在两种不同膜电压(V1和V2)下的比值决定,其中q = 2RT/(F(V2 -V1))ln(ΔI2/ΔI1) + 1。我们在表达电性SLC4碳酸氢钠共转运体NBCe2-C和NBCe1-A的HEK-293细胞中测试了这种ΔI方法,结果与使用Erev抑制剂方法获得的结果一致。此外,通过计算模拟,我们将q的估计值与ΔErev和ΔI方法进行了比较。结果表明,当膜上存在其他通道或电致转运体时,ΔErev方法会引入明显的误差,而ΔI方程准确地计算了化学计量比。结论:基于Heinz模型,我们开发了一种ΔI方法来估计电致转运体的运输化学计量。当所研究的转运体是膜中唯一的电致转运过程时,该模型简化为传统的反转电位方法。当存在其他电致转运途径时,ΔI方法消除了它们对估计q的贡献。计算模拟表明,当存在其他通道或电致转运体时,ΔErev方法引入了显著的误差,ΔI方程准确地计算了化学计量比。这种新的ΔI方法可以很容易地扩展到分析其他组织中的其他电致转运蛋白。
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BMC Biophysics
BMC Biophysics BIOPHYSICS-
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