A systemic study on the vulnerability and fatality of prostate cancer patients towards COVID-19 through analysis of the TMPRSS2, CXCL10 and their co-expressed genes.

Q2 Agricultural and Biological Sciences Genomics and Informatics Pub Date : 2022-09-01 Epub Date: 2022-09-30 DOI:10.5808/gi.22012
Md Thosif Raza, Shagufta Mizan
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引用次数: 2

Abstract

A pandemic of respiratory disease named coronavirus disease 2019 (COVID-19) is caused by a novel coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). It is reported prostate cancer patients are susceptible to COVID-19 infection. To understand the possible causes of prostate cancer patients' increased vulnerability and mortality from COVID-19 infection, we focused on the two most important agents, transmembrane protease serine subtype 2 (TMPRSS2) and the C-X-C motif 10 (CXCL10). When SARS-CoV-2 binds to the host cell via S protein-angiotensin-converting enzyme-2 receptor interaction, TMPRSS2 contributes in the proteolytic cleavage of the S protein, allowing the viral and cellular membranes to fuse. CXCL10 is a cytokine found in elevated level in both COVID-19 and cancer-causing cytokine storm. We discovered that TMPRSS2 and CXCL10 are overexpressed in prostate cancer and COVID-19 using the UALCAN and GEPIA2 datasets. The functional importance of TMPRSS2 and CXCL10 in prostate cancer development was then determined by analyzing the frequency of genetic changes in their amino acid sequences using the cBioPortal online portal. Finally, we used the PANTHER database to examine the pathology of the targeted genes. We observed that TMPRSS2 and CXCL10, together with their often co-expressed genes, are important in the binding activity and immune responses in prostate cancer and COVID-19 infection, respectively. Finally, we found that TMPRSS2 and CXCL10 are two putative biomarkers responsible for the increased vulnerability and fatality of prostate cancer patients to COVID-19.

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通过分析TMPRSS2、CXCL10及其共表达基因,系统研究前列腺癌患者对COVID-19的易感性和致死率。
2019冠状病毒病(COVID-19)是由一种新型冠状病毒——严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)引起的呼吸道疾病大流行。据报道,前列腺癌患者易感染COVID-19。为了了解前列腺癌患者因COVID-19感染而易感性和死亡率增加的可能原因,我们重点研究了两个最重要的因子,跨膜蛋白酶丝氨酸亚型2 (TMPRSS2)和C-X-C基序10 (CXCL10)。当SARS-CoV-2通过S蛋白-血管紧张素转换酶-2受体相互作用与宿主细胞结合时,TMPRSS2参与S蛋白的蛋白水解裂解,使病毒和细胞膜融合。CXCL10是一种细胞因子,在COVID-19和致癌细胞因子风暴中均呈升高水平。我们使用UALCAN和GEPIA2数据集发现TMPRSS2和CXCL10在前列腺癌和COVID-19中过表达。TMPRSS2和CXCL10在前列腺癌发展中的功能重要性随后通过使用cBioPortal在线门户网站分析其氨基酸序列的遗传变化频率来确定。最后,我们使用PANTHER数据库检查目标基因的病理。我们观察到TMPRSS2和CXCL10及其常共表达的基因分别在前列腺癌和COVID-19感染的结合活性和免疫应答中起重要作用。最后,我们发现TMPRSS2和CXCL10是前列腺癌患者对COVID-19易感性和致死率增加的两个假定的生物标志物。
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来源期刊
Genomics and Informatics
Genomics and Informatics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
1.90
自引率
0.00%
发文量
0
审稿时长
12 weeks
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