Defined PEG smears as an alternative approach to enhance the search for crystallization conditions and crystal-quality improvement in reduced screens.

Apirat Chaikuad, Stefan Knapp, Frank von Delft
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引用次数: 39

Abstract

The quest for an optimal limited set of effective crystallization conditions remains a challenge in macromolecular crystallography, an issue that is complicated by the large number of chemicals which have been deemed to be suitable for promoting crystal growth. The lack of rational approaches towards the selection of successful chemical space and representative combinations has led to significant overlapping conditions, which are currently present in a multitude of commercially available crystallization screens. Here, an alternative approach to the sampling of widely used PEG precipitants is suggested through the use of PEG smears, which are mixtures of different PEGs with a requirement of either neutral or cooperatively positive effects of each component on crystal growth. Four newly defined smears were classified by molecular-weight groups and enabled the preservation of specific properties related to different polymer sizes. These smears not only allowed a wide coverage of properties of these polymers, but also reduced PEG variables, enabling greater sampling of other parameters such as buffers and additives. The efficiency of the smear-based screens was evaluated on more than 220 diverse recombinant human proteins, which overall revealed a good initial crystallization success rate of nearly 50%. In addition, in several cases successful crystallizations were only obtained using PEG smears, while various commercial screens failed to yield crystals. The defined smears therefore offer an alternative approach towards PEG sampling, which will benefit the design of crystallization screens sampling a wide chemical space of this key precipitant.

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将聚乙二醇涂片定义为一种替代方法,以增强对结晶条件的搜索和减少筛选中晶体质量的改善。
在大分子晶体学中,寻找一组最佳的有限有效结晶条件仍然是一个挑战,这个问题因大量被认为适合促进晶体生长的化学物质而变得复杂。缺乏合理的方法来选择成功的化学空间和有代表性的组合,导致了显著的重叠条件,目前存在于许多商业上可用的结晶筛中。在这里,通过使用PEG涂片,提出了广泛使用PEG沉淀剂取样的另一种方法,该方法是不同PEG的混合物,要求每种组分对晶体生长具有中性或协同积极的影响。四种新定义的涂片按分子量分组分类,并保留了与不同聚合物尺寸相关的特定性能。这些涂片不仅可以广泛覆盖这些聚合物的特性,还可以减少PEG变量,从而可以对其他参数(如缓冲液和添加剂)进行更大的采样。基于涂片的筛选对220多种重组人蛋白的效率进行了评估,总体上显示了接近50%的良好初始结晶成功率。此外,在一些情况下,只有使用PEG涂片才能获得成功的结晶,而各种商业筛选都不能产生晶体。因此,定义的涂片为PEG采样提供了一种替代方法,这将有利于结晶筛的设计,对这种关键沉淀剂的广泛化学空间进行采样。
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