Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis.

Q1 Biochemistry, Genetics and Molecular Biology Advances in Bioinformatics Pub Date : 2016-01-01 Epub Date: 2016-06-02 DOI:10.1155/2016/8054219
Manish Kurhekar, Umesh Deshpande
{"title":"Agent-Based Deterministic Modeling of the Bone Marrow Homeostasis.","authors":"Manish Kurhekar,&nbsp;Umesh Deshpande","doi":"10.1155/2016/8054219","DOIUrl":null,"url":null,"abstract":"<p><p>Modeling of stem cells not only describes but also predicts how a stem cell's environment can control its fate. The first stem cell populations discovered were hematopoietic stem cells (HSCs). In this paper, we present a deterministic model of bone marrow (that hosts HSCs) that is consistent with several of the qualitative biological observations. This model incorporates stem cell death (apoptosis) after a certain number of cell divisions and also demonstrates that a single HSC can potentially populate the entire bone marrow. It also demonstrates that there is a production of sufficient number of differentiated cells (RBCs, WBCs, etc.). We prove that our model of bone marrow is biologically consistent and it overcomes the biological feasibility limitations of previously reported models. The major contribution of our model is the flexibility it allows in choosing model parameters which permits several different simulations to be carried out in silico without affecting the homeostatic properties of the model. We have also performed agent-based simulation of the model of bone marrow system proposed in this paper. We have also included parameter details and the results obtained from the simulation. The program of the agent-based simulation of the proposed model is made available on a publicly accessible website. </p>","PeriodicalId":39059,"journal":{"name":"Advances in Bioinformatics","volume":"2016 ","pages":"8054219"},"PeriodicalIF":0.0000,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2016/8054219","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1155/2016/8054219","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2016/6/2 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

Abstract

Modeling of stem cells not only describes but also predicts how a stem cell's environment can control its fate. The first stem cell populations discovered were hematopoietic stem cells (HSCs). In this paper, we present a deterministic model of bone marrow (that hosts HSCs) that is consistent with several of the qualitative biological observations. This model incorporates stem cell death (apoptosis) after a certain number of cell divisions and also demonstrates that a single HSC can potentially populate the entire bone marrow. It also demonstrates that there is a production of sufficient number of differentiated cells (RBCs, WBCs, etc.). We prove that our model of bone marrow is biologically consistent and it overcomes the biological feasibility limitations of previously reported models. The major contribution of our model is the flexibility it allows in choosing model parameters which permits several different simulations to be carried out in silico without affecting the homeostatic properties of the model. We have also performed agent-based simulation of the model of bone marrow system proposed in this paper. We have also included parameter details and the results obtained from the simulation. The program of the agent-based simulation of the proposed model is made available on a publicly accessible website.

Abstract Image

Abstract Image

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于agent的骨髓稳态确定性建模。
干细胞的建模不仅描述而且预测了干细胞的环境如何控制它的命运。最早发现的干细胞群是造血干细胞(hsc)。在本文中,我们提出了一个与几个定性生物学观察一致的骨髓(宿主造血干细胞)的确定性模型。该模型包含了一定数量的细胞分裂后的干细胞死亡(凋亡),也证明了单个HSC可以潜在地填充整个骨髓。它还表明有足够数量的分化细胞(红细胞,白细胞等)的产生。我们证明我们的骨髓模型在生物学上是一致的,它克服了以前报道的模型的生物学可行性限制。我们的模型的主要贡献是它允许选择模型参数的灵活性,允许在不影响模型的稳态特性的情况下在计算机上进行几种不同的模拟。我们还对本文提出的骨髓系统模型进行了基于agent的仿真。我们还包括参数细节和从模拟中得到的结果。提出的模型的基于代理的仿真程序在一个可公开访问的网站上提供。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Advances in Bioinformatics
Advances in Bioinformatics Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (miscellaneous)
自引率
0.00%
发文量
0
期刊最新文献
Computational Genomics A Guide to RNAseq Data Analysis Using Bioinformatics Approaches Computational Metabolomics Bioinformatics in Personalized Medicine Bioinformatics Tools for Gene and Genome Annotation Analysis of Microbes for Synthetic Biology and Cancer Biology Applications
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1