Allosteric autoactivation of SOS and its kinetic mechanism.

Q2 Biochemistry, Genetics and Molecular Biology Small GTPases Pub Date : 2021-01-01 Epub Date: 2019-04-13 DOI:10.1080/21541248.2019.1601954
Hanh My Hoang, Hope Gloria Umutesi, Jongyun Heo
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Abstract

Son of Sevenless (SOS), one of guanine nucleotide exchange factors (GEFs), activates Ras. We discovered that the allosteric domain of SOS yields SOS to proceed a previously unrecognized autoactivation kinetics. Its essential feature is a time-dependent acceleration of SOS feedback activation with a reaction initiator or with the priming of active Ras. Thus, this mechanistic autoactivation feature explains the notion, previously only conjectured, of accelerative SOS activation followed by the priming of active Ras, an action produced by another GEF Ras guanyl nucleotide-releasing protein (RasGRP). Intriguingly, the kinetic transition from gradual RasGRP activation to accelerative SOS activation has been interpreted as an analog to digital conversion; however, from the perspective of autoactivation kinetics, it is a process of straightforward RasGRP-mediated SOS autoactivation. From the viewpoint of allosteric protein cooperativity, SOS autoactivation is a unique time-dependent cooperative SOS activation because it enables an active SOS to accelerate activation of other SOS as a function of time. This time-dependent SOS cooperativity does not belong to the classic steady-state protein cooperativity, which depends on ligand concentration. Although its hysteretic or sigmoid-like saturation curvature is a classic hallmark of steady-state protein cooperativity, its hyperbolic saturation figure typically represents protein noncooperativity. We also discovered that SOS autoactivation perturbs the previously predicted hysteresis of SOS activation in a steady state to produce a hyperbolic saturation curve. We interpret this as showing that SOS allostery elicits, through SOS autoactivation, cooperativity uniquely time-dependent but not ligand concentration dependent.

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SOS 的异相自动激活及其动力学机制。
无七之子(SOS)是鸟嘌呤核苷酸交换因子(GEF)之一,能激活 Ras。我们发现,SOS 的异构结构域能使 SOS 进行以前从未认识到的自动激活动力学。它的基本特征是,在反应启动器或活性 Ras 的启动下,SOS 的反馈激活会随时间而加速。因此,这种机制上的自动激活特征解释了以前只是猜测的加速 SOS 激活后启动活性 Ras 的概念,这种作用是由另一个 GEF Ras 鸟苷酸释放蛋白(RasGRP)产生的。耐人寻味的是,从 RasGRP 逐步激活到 SOS 加速激活的动力学转变被解释为类似于数字转换;然而,从自激活动力学的角度来看,这是一个由 RasGRP 介导的 SOS 直接自激活过程。从异位蛋白合作性的角度来看,SOS 自激活是一种独特的依赖时间的合作性 SOS 激活,因为它能使一个活跃的 SOS 随着时间的推移加速激活其他 SOS。这种依赖时间的 SOS 合作性不属于经典的稳态蛋白质合作性,后者取决于配体浓度。尽管其滞后或类似于西格玛的饱和曲率是稳态蛋白质合作性的典型特征,但其双曲饱和度数字通常代表蛋白质的非合作性。我们还发现,SOS 自激活扰乱了之前预测的稳态 SOS 激活滞后,从而产生了双曲饱和曲线。我们将此解释为,SOS 异质通过 SOS 自激活激发了合作性,这种合作性与时间无关,但与配体浓度无关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Small GTPases
Small GTPases Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
6.10
自引率
0.00%
发文量
6
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