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{"title":"Using EMBL-EBI Services via Web Interface and Programmatically via Web Services","authors":"Fábio Madeira, Nandana Madhusoodanan, Joon Lee, Adrian R.N. Tivey, Rodrigo Lopez","doi":"10.1002/cpbi.74","DOIUrl":null,"url":null,"abstract":"<p>The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of core databases and analysis tools that are of key importance in bioinformatics. As well as providing web interfaces to these resources, web services are available using REST and SOAP protocols that enable programmatic access and allow their integration into other applications and analytical workflows and pipelines. This article describes the various options available to researchers and bioinformaticians who would like to use our resources via the web interface employing RESTful web service clients provided in Perl, Python, and Java, or would like to use Docker containers to integrate the resources into analysis pipelines and workflows. © 2019 by John Wiley & Sons, Inc.</p>","PeriodicalId":10958,"journal":{"name":"Current protocols in bioinformatics","volume":"66 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2019-04-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1002/cpbi.74","citationCount":"22","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current protocols in bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/cpbi.74","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 22
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Abstract
The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of core databases and analysis tools that are of key importance in bioinformatics. As well as providing web interfaces to these resources, web services are available using REST and SOAP protocols that enable programmatic access and allow their integration into other applications and analytical workflows and pipelines. This article describes the various options available to researchers and bioinformaticians who would like to use our resources via the web interface employing RESTful web service clients provided in Perl, Python, and Java, or would like to use Docker containers to integrate the resources into analysis pipelines and workflows. © 2019 by John Wiley & Sons, Inc.
通过Web接口和通过Web服务编程使用EMBL-EBI服务
欧洲生物信息学研究所(EMBL-EBI)提供对生物信息学中至关重要的广泛核心数据库和分析工具的访问。除了为这些资源提供web接口外，web服务还可以使用REST和SOAP协议来实现编程访问，并允许将它们集成到其他应用程序和分析工作流和管道中。本文描述了研究人员和生物信息学家的各种选择，他们希望通过使用Perl、Python和Java提供的RESTful web服务客户端通过web界面使用我们的资源，或者希望使用Docker容器将资源集成到分析管道和工作流中。©2019 by John Wiley &儿子,Inc。
本文章由计算机程序翻译，如有差异，请以英文原文为准。
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