Multi-Institutional Deep Learning Modeling Without Sharing Patient Data: A Feasibility Study on Brain Tumor Segmentation.

Micah J Sheller, G Anthony Reina, Brandon Edwards, Jason Martin, Spyridon Bakas
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引用次数: 334

Abstract

Deep learning models for semantic segmentation of images require large amounts of data. In the medical imaging domain, acquiring sufficient data is a significant challenge. Labeling medical image data requires expert knowledge. Collaboration between institutions could address this challenge, but sharing medical data to a centralized location faces various legal, privacy, technical, and data-ownership challenges, especially among international institutions. In this study, we introduce the first use of federated learning for multi-institutional collaboration, enabling deep learning modeling without sharing patient data. Our quantitative results demonstrate that the performance of federated semantic segmentation models (Dice=0.852) on multimodal brain scans is similar to that of models trained by sharing data (Dice=0.862). We compare federated learning with two alternative collaborative learning methods and find that they fail to match the performance of federated learning.

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不共享患者数据的多机构深度学习建模:脑肿瘤分割的可行性研究。
图像语义分割的深度学习模型需要大量的数据。在医学成像领域,获取足够的数据是一个重大挑战。标记医学图像数据需要专业知识。机构之间的协作可以解决这一挑战,但将医疗数据共享到集中位置面临各种法律、隐私、技术和数据所有权方面的挑战,特别是在国际机构之间。在本研究中,我们首次将联邦学习用于多机构协作,实现深度学习建模,而无需共享患者数据。我们的定量结果表明,联邦语义分割模型(Dice=0.852)在多模态大脑扫描上的性能与通过共享数据训练的模型(Dice=0.862)相似。我们将联邦学习与两种替代的协作学习方法进行了比较,发现它们都无法达到联邦学习的性能。
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Leveraging 2D Deep Learning ImageNet-trained models for Native 3D Medical Image Analysis. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 8th International Workshop, BrainLes 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Revised Selected Papers Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part I Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 7th International Workshop, BrainLes 2021, Held in Conjunction with MICCAI 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part II
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