Exploring the role of GS–GOGAT cycle in microcystin synthesis and regulation – a model based analysis†

IF 3.743 Q2 Biochemistry, Genetics and Molecular Biology Molecular BioSystems Pub Date : 2017-10-05 DOI:10.1039/C7MB00342K
Swarnendu Banerjee, Abhishek Subramanian, Joydev Chattopadhyay and Ram Rup Sarkar
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引用次数: 2

Abstract

Toxic cyanobacteria blooms populate water bodies by consuming external nutrients and releasing cyanotoxins that are detrimental for other aquatic species, producing a significant impact on the plankton ecosystem and food web. To exercise population-level control of toxin production, understanding the biochemical mechanisms that explain cyanotoxin regulation within a bacterial cell is of utmost importance. In this study, we explore the mechanistic events to investigate the dependence of toxin microcystin on external nitrogen, a known regulator of the toxin, and for the first time, propose a kinetic model that analyzes the intracellular conditions required to ensure nitrogen dependence on microcystin. We hypothesize that the GS–GOGAT cycle is manipulated by variable influx of different intracellular metabolites that can either disturb or promote the balance between the enzyme microcystin synthetase and substrate glutamate to produce variable microcystin levels. As opposed to the popular notion that nitrogen starvation increases microcystin synthesis, our analyses suggest that under certain intracellular metabolite regimes, this relationship can either be completely lost or reversed. External nitrogen can only complement the conditions fixed by intracellular glutamate, glutamine and 2-oxoglutarate. This mechanistic understanding can provide an experimentally testable hypothesis for exploring the less-known biology of microcystin synthesis and designing specific interventions.

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探索GS-GOGAT循环在微囊藻毒素合成和调控中的作用-基于模型的分析
有毒的蓝藻通过消耗外部营养物质并释放对其他水生物种有害的蓝藻毒素,在水体中大量繁殖,对浮游生物生态系统和食物网产生重大影响。为了在种群水平上控制毒素的产生,了解解释细菌细胞内蓝藻毒素调节的生化机制是至关重要的。在本研究中,我们探索了微囊藻毒素依赖外部氮的机制事件,并首次提出了一个动力学模型,分析了确保微囊藻毒素对氮依赖所需的细胞内条件。我们假设GS-GOGAT循环是由不同细胞内代谢物的可变流入操纵的,这些代谢物可以扰乱或促进微囊藻毒素合成酶和底物谷氨酸之间的平衡,从而产生可变的微囊藻毒素水平。与氮饥饿增加微囊藻毒素合成的流行观点相反,我们的分析表明,在某些细胞内代谢物制度下,这种关系可能完全丧失或逆转。外部氮只能补充细胞内谷氨酸、谷氨酰胺和2-氧葡萄糖酸盐所固定的条件。这种机制的理解可以为探索微囊藻毒素合成的鲜为人知的生物学和设计特定的干预措施提供一个实验可验证的假设。
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来源期刊
Molecular BioSystems
Molecular BioSystems 生物-生化与分子生物学
CiteScore
2.94
自引率
0.00%
发文量
0
审稿时长
2.6 months
期刊介绍: Molecular Omics publishes molecular level experimental and bioinformatics research in the -omics sciences, including genomics, proteomics, transcriptomics and metabolomics. We will also welcome multidisciplinary papers presenting studies combining different types of omics, or the interface of omics and other fields such as systems biology or chemical biology.
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