{"title":"Dark Suite: a comprehensive toolbox for computer-aided drug design.","authors":"Eleni Papakonstantinou, Vasileios Megalooikonomou, Dimitrios Vlachakis","doi":"10.14806/ej.25.0.928","DOIUrl":null,"url":null,"abstract":"<p><p>Dark Suite is a complete interactive software pipeline aiming to exploit the advantages of free software and modern programming. Besides two commands (installation and opening) on the command line, the handling and the program operation is done through a user's friendly interface. This platform has a central graphical interface which allows the user to choose in what computational tool to work. Each computational tool has an interface. Dark Suite combines the functions of other programmes to create a pipeline for high-quality secondary effects through a friendly user interface. It is made to run on GNU / Linux distributions and its interface was built using JAVA to seamlessly integrate scientific tools written in Perl, Java, R and Python.</p>","PeriodicalId":72893,"journal":{"name":"EMBnet.journal","volume":"25 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7164806/pdf/nihms-1576509.pdf","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"EMBnet.journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.14806/ej.25.0.928","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/3/13 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
Abstract
Dark Suite is a complete interactive software pipeline aiming to exploit the advantages of free software and modern programming. Besides two commands (installation and opening) on the command line, the handling and the program operation is done through a user's friendly interface. This platform has a central graphical interface which allows the user to choose in what computational tool to work. Each computational tool has an interface. Dark Suite combines the functions of other programmes to create a pipeline for high-quality secondary effects through a friendly user interface. It is made to run on GNU / Linux distributions and its interface was built using JAVA to seamlessly integrate scientific tools written in Perl, Java, R and Python.
Dark Suite是一个完整的交互式软件管道，旨在利用自由软件和现代编程的优势。除了命令行上的两个命令(安装和打开)，处理和程序操作都是通过用户友好的界面完成的。该平台有一个中央图形界面，允许用户选择使用哪种计算工具。每个计算工具都有一个接口。Dark Suite结合了其他程序的功能，通过友好的用户界面创建了高质量的二次效果管道。它是在GNU / Linux发行版上运行的，它的界面是用JAVA构建的，可以无缝地集成用Perl、JAVA、R和Python编写的科学工具。
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