Plasmidome of an environmental Acinetobacter lwoffii strain originating from a former gold and arsenic mine

IF 1.8 4区 生物学 Q3 GENETICS & HEREDITY Plasmid Pub Date : 2020-07-01 DOI:10.1016/j.plasmid.2020.102505
Tomasz Walter, Joanna Klim, Marcin Jurkowski, Jan Gawor, Iwona Köhling, Małgorzata Słodownik, Urszula Zielenkiewicz
{"title":"Plasmidome of an environmental Acinetobacter lwoffii strain originating from a former gold and arsenic mine","authors":"Tomasz Walter,&nbsp;Joanna Klim,&nbsp;Marcin Jurkowski,&nbsp;Jan Gawor,&nbsp;Iwona Köhling,&nbsp;Małgorzata Słodownik,&nbsp;Urszula Zielenkiewicz","doi":"10.1016/j.plasmid.2020.102505","DOIUrl":null,"url":null,"abstract":"<div><p>Emerging important <em>Acinetobacter</em> strains commonly accommodate a plethora of mobile elements including plasmids of different size. Plasmids, apart from encoding modules enabling their self-replication and/or transmission, can carry a diverse number of genes, allowing the host cell to survive in an environment that would otherwise be lethal or restrictive for growth. The present study characterizes the plasmidome generated from an arsenic-resistant strain named ZS207, classified as <em>Acinetobacter lwoffii</em>. Sequencing effort revealed the presence of nine plasmids in the size between 4.3 and 38.4 kb as well as one 186.6 kb megaplasmid. All plasmids, except the megaplasmid, do apparently not confer distinguishing phenotypic features. In contrast, the megaplasmid carries arsenic and heavy metals resistance regions similar to those found in permafrost <em>A. lwoffii</em> strains. In-depth <em>in silico</em> analyses have shown a significant similarity between the regions from these plasmids, especially concerning multiple transposable elements, transfer and mobilization genes, and toxin-antitoxin systems.</p><p>Since <em>ars</em> genes encode proteins of major significance in terms of potential use in bioremediation, arsenic resistance level of ZS207 was determined and the functionality of selected <em>ars</em> genes was examined. Additionally, we checked the functionality of plasmid-encoded toxin-antitoxin systems and their impact on the formation of persister cells.</p></div>","PeriodicalId":49689,"journal":{"name":"Plasmid","volume":"110 ","pages":"Article 102505"},"PeriodicalIF":1.8000,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.plasmid.2020.102505","citationCount":"8","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plasmid","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0147619X20300172","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 8

Abstract

Emerging important Acinetobacter strains commonly accommodate a plethora of mobile elements including plasmids of different size. Plasmids, apart from encoding modules enabling their self-replication and/or transmission, can carry a diverse number of genes, allowing the host cell to survive in an environment that would otherwise be lethal or restrictive for growth. The present study characterizes the plasmidome generated from an arsenic-resistant strain named ZS207, classified as Acinetobacter lwoffii. Sequencing effort revealed the presence of nine plasmids in the size between 4.3 and 38.4 kb as well as one 186.6 kb megaplasmid. All plasmids, except the megaplasmid, do apparently not confer distinguishing phenotypic features. In contrast, the megaplasmid carries arsenic and heavy metals resistance regions similar to those found in permafrost A. lwoffii strains. In-depth in silico analyses have shown a significant similarity between the regions from these plasmids, especially concerning multiple transposable elements, transfer and mobilization genes, and toxin-antitoxin systems.

Since ars genes encode proteins of major significance in terms of potential use in bioremediation, arsenic resistance level of ZS207 was determined and the functionality of selected ars genes was examined. Additionally, we checked the functionality of plasmid-encoded toxin-antitoxin systems and their impact on the formation of persister cells.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
原金砷矿环境不动杆菌lwoffii菌株的质粒
新兴的重要不动杆菌菌株通常容纳大量的移动元件,包括不同大小的质粒。质粒除了编码模块使其能够自我复制和/或传播外,还可以携带多种基因,使宿主细胞能够在致命或限制生长的环境中生存。本研究表征了一种名为ZS207的抗砷菌株产生的质粒,该菌株被归类为lwoffii不动杆菌。测序结果显示存在9个大小在4.3 - 38.4 kb之间的质粒和1个186.6 kb的巨型质粒。所有的质粒,除了巨质粒,显然不赋予显著的表型特征。相比之下,巨型质粒携带的砷和重金属抗性区域与永久冻土中发现的伊沃菲氏杆菌菌株相似。深入的硅分析表明,这些质粒的区域之间存在显著的相似性,特别是涉及多个转座元件,转移和动员基因以及毒素-抗毒素系统。由于ars基因编码的蛋白质在生物修复中具有重要的潜在用途,因此我们确定了ZS207的抗砷水平,并对所选ars基因的功能进行了检测。此外,我们检查了质粒编码的毒素-抗毒素系统的功能及其对持久性细胞形成的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Plasmid
Plasmid 生物-遗传学
CiteScore
4.70
自引率
3.80%
发文量
21
审稿时长
53 days
期刊介绍: Plasmid publishes original research on genetic elements in all kingdoms of life with emphasis on maintenance, transmission and evolution of extrachromosomal elements. Objects of interest include plasmids, bacteriophages, mobile genetic elements, organelle DNA, and genomic and pathogenicity islands.
期刊最新文献
miRNA heterologous production in bacteria: A systematic review focusing on the choice of plasmid features and bacterial/prokaryotic microfactory Characterization and functional insights of the novel RC-type plasmid pAnox1 from Anoxybacillus gonensis 05S15 Plasmids affect microindel mutations in Acinetobacter baylyi ADP1 Shedding light on Klebsiella pneumoniae virulence: Engineering of broad host range bioluminescence reporter vectors for transcriptional analysis in drug resistant pathogens. Development of a thermostable Cre/lox-based gene disruption system and in vivo manipulations of the megaplasmid pTT27 in Thermus thermophilus HB27
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1